Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01872 ATGTCACTACAGGCCTTCAAAGAAACTCTTCTTAGGCCCTGTTCCAGTTTTACAATTCAATCCTCCTCCTCCTTTTCCTCAAGCTTTACATCTCAGCAAACACAAACCTCAACCCTCAATGATCCCTTTTCAATTGACCTCTCGCTAACCAGGAAACCCCCCAAATCCTCTCTCTCACAACAGCTTCTTCGTTTGGAACAAGAAAACGCAGAACTTTATTTTCCTCCAATCCAACCCCACAAAAATTCCGCCCCAAAGCAACGAACTTTTCAACAGAAACTTGAGAAAGAAGAAGAAAAGGAAGAGGATGAGGAGGAGGAGCATGAACTTGACACCATAAGGCTTCCCAGAGCTAAATTGTCTGAGTTTCAGTTTGATCAAACTGGACACTATGAGCCGTTAATCTTGTCGTCGCTGGGAGAAGTTCCCGCGGTTCAGGTTCCTGCATCTATCAACTGCAGATTGCTAGCACATCAGAGAGAAGGAGTCAAGTTTCTCTACAATTTGTATAGAAACAACCAAGGAGGAATTCTTGGAGATGACATGGGCCTTGGCAAGACCATACAGACGATAGCCTTTCTTGCTGCTGTGTTCGGTAAAGATGGCGAGTATCCTGAATCTAAGTTGCCTAGAGATCCTGTATTAATAGTTTGCCCAACTTCAGTTAGCCATAACTGGGAGGATGAATTTTCTAGGTGGGCCACCTTTACTGTATCAATTTACCACGGTGCAAACAGGGATCTGATACGTGATAAATTGATAGCTGGTGGCGTAGAGATACTTATAACCAGCTTTGACACCTTTAGAATTCATGGAAGCATCTTGTCAGATATTAGTTGGGAAATGGTGATCATTGATGAGGCACATCGGCTCAAGAATGATAAATCGAAATTGTATGGAGCATGCTTAGAAATTAAAACCAGGAAACGCTATGGTCTTACTGGAACTGTCATGCAAAATAAGATCATGGAATTGTTTAATCTCTTTGACTGGGTTGCCCCAGGATCCTTGGGAACCAGGGAACATTTCAGGGATTATTATGATGAGCCACTCAAGCATGGCCAAAGGTCAACTGCTCCTGAGAAATTTGTCCAAAAAGCAAATGAGCGGAAAGAACACCTTGTGAAAGTTCTTGGTAAATATATGCTAAGAAGGACGAAAGAAGAAACTATTGGACATCTTATGATGGGGAAGGAAGATAATGTTGTATTTTGTTCCATGAGTGACTTGCAAAAACGTGCGTATAGGAGAATGTTACAACTTCCAGAAATCCAATGCCTTATAAATAAGGACCTTCCATGTAGTTGTGGGAGCCCACTGACTAAAGTGGAATGTTGCAAGAGGATTGTACCAGATGGGATCATCTGGCGTCACCTTCATAAGGATAATCCTGAAGGTTGTGATTCATGTCCCTACTGCGTAGTGCTTCCTTGCCTCGTTAAGCTGCAGCAGATCAGTAATCACCTTGAGCTGATCAAGTCAAACCCAAAGGATGACCCTGATAAGCAAAAGAGAGATGAACAATTTGCAGCCACCGTCTTTGGCCCTGACATTGATCTGGTAGGTGGAAGTACACAGAATGAGAGTTTTATGGGATTAAGTGATGTGGAACATTGTGGTAAAATGCGAGCACTTGAAAGGTTATTGCATTCTTGGATTTCAGGAGGTGATAAAGTTCTTTTGTTCAGCTACTCTGTCAGGATGCTGGACATACTGGAGAAATTTCTTGTCCGAAAAGGCTATAGCTATTCAAGACTTGATGGTTCAACTCCATCAAACTTGCGTCAATCTCTTGTTGACGACTTCAACAGAAGCCCCAGCAAGCGAGTGTTCCTTATATCTACTCGAGCTGGTGGGCTTGGGCTAAACCTTGTGAGCGCAAATCGTGTAGTGATATTCGATCCCAACTGGAATCCCGCACATGACTTACAGGCACAGGACCGGTCCTTTCGGTTTGGGCAGAAGCGGCATGTTGTGGTTTTTCGTCTCCTTGCAGCTGGTTCTCTTGAAGAACTTGTTTATTCTCGTCAGGTGTACAAACAGCAGCTTTCAAATATTGCTGTCTCCGGAAAGATGGAAAATAGATATTTCGAAGGTGTCCAGGACTGCAAGGAATTTCAGGGTGAACTTTTTGGAATTTGTAATTTGTTCCGTGATTTATCGGACAAGCTGTTTACGAGTGAAATAATTGAGTTGCATGAGAAGCACGGGAAAGAGACAAGGAATTACCATAATAAACGCCAGAAGATTACCAAACATGGAGGGGGTATTGGTCCTTTAAAAGAATCAGCCGTAGCTGTTCCATCACTTTCTGAGAATGGGGTATCTATTGATTCTGACAAGTATACTTCTAAACCAGTTACTGAAGACCTGGGGATTGTTTATGCTCATCGTAATGAAGACATTGTCAACAAGGGAGCTGGAGTTCAGGGAGAGGCAAATGTCAGCATCTCCCAGATTGATAATGTAAGCATGCCTCAGATGAAAAGAAGGAAAGCAAATGGAAAAGAGAACGCGTCTTCTATCAACGAGAGAAAAACTCAATACAGTCTTCTTGCCAAGTCCATGGGCATGAAAGAACTTGAATTTAGCGAGTGGTTTCTTTCTGCAACCCCACTGGAGAGGGAGAAAGTGCTCCATGACTACAAGAAAAGAAAGCAAATGATACCAAATGGTTGA 2679 0.4278 MSLQAFKETLLRPCSSFTIQSSSSFSSSFTSQQTQTSTLNDPFSIDLSLTRKPPKSSLSQQLLRLEQENAELYFPPIQPHKNSAPKQRTFQQKLEKEEEKEEDEEEEHELDTIRLPRAKLSEFQFDQTGHYEPLILSSLGEVPAVQVPASINCRLLAHQREGVKFLYNLYRNNQGGILGDDMGLGKTIQTIAFLAAVFGKDGEYPESKLPRDPVLIVCPTSVSHNWEDEFSRWATFTVSIYHGANRDLIRDKLIAGGVEILITSFDTFRIHGSILSDISWEMVIIDEAHRLKNDKSKLYGACLEIKTRKRYGLTGTVMQNKIMELFNLFDWVAPGSLGTREHFRDYYDEPLKHGQRSTAPEKFVQKANERKEHLVKVLGKYMLRRTKEETIGHLMMGKEDNVVFCSMSDLQKRAYRRMLQLPEIQCLINKDLPCSCGSPLTKVECCKRIVPDGIIWRHLHKDNPEGCDSCPYCVVLPCLVKLQQISNHLELIKSNPKDDPDKQKRDEQFAATVFGPDIDLVGGSTQNESFMGLSDVEHCGKMRALERLLHSWISGGDKVLLFSYSVRMLDILEKFLVRKGYSYSRLDGSTPSNLRQSLVDDFNRSPSKRVFLISTRAGGLGLNLVSANRVVIFDPNWNPAHDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMENRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIELHEKHGKETRNYHNKRQKITKHGGGIGPLKESAVAVPSLSENGVSIDSDKYTSKPVTEDLGIVYAHRNEDIVNKGAGVQGEANVSISQIDNVSMPQMKRRKANGKENASSINERKTQYSLLAKSMGMKELEFSEWFLSATPLEREKVLHDYKKRKQMIPNG* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01872 892 PANTHER SNF2/RAD54 FAMILY MEMBER 32 840 - -
Pte15g01872 892 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 335 IPR014001 -
Pte15g01872 892 SMART ultradead3 151 343 IPR014001 -
Pte15g01872 892 Gene3D - 134 384 IPR038718 -
Pte15g01872 892 Gene3D - 397 750 IPR027417 -
Pte15g01872 892 Pfam SNF2-related domain 159 425 IPR000330 GO:0005524|GO:0140658
Pte15g01872 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 706 IPR027417 -
Pte15g01872 892 CDD SF2_C_SNF 538 664 - -
Pte15g01872 892 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 136 384 - -
Pte15g01872 892 MobiDBLite consensus disorder prediction 19 45 - -
Pte15g01872 892 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 544 697 IPR001650 -
Pte15g01872 892 MobiDBLite consensus disorder prediction 74 111 - -
Pte15g01872 892 Pfam Helicase conserved C-terminal domain 541 653 IPR001650 -
Pte15g01872 892 SMART helicmild6 570 653 IPR001650 -
Pte15g01872 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 385 IPR027417 -
Pte15g01872 892 Coils Coil 86 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01872 Pte-Chr15 24182592 24188412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01872 542 683 RAD5 or RAD16-like Gene Family AT5G43530 38.028 4.31e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte15g01872 SNF2_N 7.8e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01872 K20098 - cave:132182799 1243.8