Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01863 ATGCCTGCCCAGAAGCGGACTTTGGTCGAGTCTCTTGACGACGAAGATACTTCAACACAACTTCATTACCATCGACATGCCAAGCAATCTCGGCGAGATGGACAACTCAGAGATGAGGAACAAGACCAGCAAAATGACCTGGAGCAACAAGATGCAGATGGAGTTGGAGCAGGAGCAGGAGCTACTGCAAGTGGAGTAGGACAAGAGGAACACGATGAAGAAAAGGATGATGATGATGATGGAGGTCAAGGAGGTGCAGATGGAGAACAGGAAGAAGAAGATGATTCTGAAGGAGGCCCATCTTCTGCAACTGAAGATAAACTGGAATTCGTTTATGTGGAACTATCAGAAATTCGTAAAGATGTGCAGTGTCCAATTTGTCTCGGAATTATAAAAAAGACACGAACTGTGATGGAATGCCTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCCAGTAGGCGTTCTTTAAGAGATGATCCAAACTATGATGCAATTATTGCCACATTGTACCCAGATATTGAGAAGTATGAAGAAGAGGAATTGACATTTCTTGAAGAGGAAAAGGCACGGAATAAGCAGATTCAAGCTTCAATTGCCAAAATAGTTCAAAGGCAATCTGAAGCATTGGGGAAAAAACGTCCTTCGGGTAAAGATACAGTATCGACGTTCTCACCTAGACTGCGAAACAATCGCAATTCTCATTCGAGGAGACGAAATCACACTATTGATCTTCATGGATCTGAAGAGAACGATGATGAAAATGATAATAATGTGGAAAAGGATTCATCTTCAGCAGATGAGCGTAGTACAACATTTAGGCAAAGAAGGCGAAAGAGACGAGCTAGAACTCGAAACTCTCATCCTTCTTCCTCAATGGCCAGTCCTGATGGTGAAACTGCAGAAAATGATGCAGACATAAGCAAAGAAAACAGAGGAATTTCTCCTGGACTAGTGTCCAATCCTGAAATGCTCGCTTGGGGCCCTCGTGGTGCTCGAAGTCACACAAGACATGGTGGTGCTAGTGGTGGCAACAATAAAAGCTCCCGCAGCACTCGCTTGTCAAAGTTTGTTGAGCATCTACGAAGTTTGGATGAAAATAATGATGAGTTAGATGTTCATCTTATGCTTGTCTCTCTGGAAAAGGAAAGTGCACCAAGTCTGATGCAGCCTTACCTTTGTTGTCATCCAACTCTGTCGATCAAGCACCTCTGCGAATATATTGCTCGTCAGACTCTGTTGCGAGCAGAAGAAGTTGAGATATTATCATTAAAAGGGTGCTTCTCGGAACCATCGGCCAGTAATGATTCAGACCTAAAACAAAACTTTGATCTTACTGCCTTGATTGTCGATCCAAGAAATGCAGAACAGAAAATTATGGAAGATCATGAAACTCTGGGTACTATTAGAGCCAGTTGCATTTCCATTAGGGAACATATGATTCTAGCATACAGGCGAAAGGTAATGGCATAG 1521 0.4339 MPAQKRTLVESLDDEDTSTQLHYHRHAKQSRRDGQLRDEEQDQQNDLEQQDADGVGAGAGATASGVGQEEHDEEKDDDDDGGQGGADGEQEEEDDSEGGPSSATEDKLEFVYVELSEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDAIIATLYPDIEKYEEEELTFLEEEKARNKQIQASIAKIVQRQSEALGKKRPSGKDTVSTFSPRLRNNRNSHSRRRNHTIDLHGSEENDDENDNNVEKDSSSADERSTTFRQRRRKRRARTRNSHPSSSMASPDGETAENDADISKENRGISPGLVSNPEMLAWGPRGARSHTRHGGASGGNNKSSRSTRLSKFVEHLRSLDENNDELDVHLMLVSLEKESAPSLMQPYLCCHPTLSIKHLCEYIARQTLLRAEEVEILSLKGCFSEPSASNDSDLKQNFDLTALIVDPRNAEQKIMEDHETLGTIRASCISIREHMILAYRRKVMA* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01863 506 MobiDBLite consensus disorder prediction 1 106 - -
Pte15g01863 506 ProSitePatterns Zinc finger RING-type signature. 140 149 IPR017907 -
Pte15g01863 506 CDD RING-HC_RING1-like 121 186 - -
Pte15g01863 506 SUPERFAMILY RING/U-box 108 195 - -
Pte15g01863 506 SMART ring_2 124 163 IPR001841 -
Pte15g01863 506 ProSiteProfiles Zinc finger RING-type profile. 124 164 IPR001841 -
Pte15g01863 506 MobiDBLite consensus disorder prediction 8 23 - -
Pte15g01863 506 PANTHER OS11G0578200 PROTEIN 1 503 IPR044592 -
Pte15g01863 506 MobiDBLite consensus disorder prediction 274 289 - -
Pte15g01863 506 MobiDBLite consensus disorder prediction 222 368 - -
Pte15g01863 506 Coils Coil 201 221 - -
Pte15g01863 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 194 IPR013083 -
Pte15g01863 506 MobiDBLite consensus disorder prediction 71 99 - -
Pte15g01863 506 Pfam Zinc finger, C3HC4 type (RING finger) 123 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01863 Pte-Chr15 24131394 24136805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01863 117 187 C3H Transcription Factor Family AT3G23060 33.784 6.35e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01863 K10695 - qsa:O6P43_028829 536.569