Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01860 ATGAATAGCGATTATGCTCATGAACAGCATGAGTTTCATCACTCTCACCAACTCTTTTCCTCGAAGAAGTCCCTTCGGGACATTGACATCCCACCAAGAAAGCTTCTCAGCCGCCGTGCAGTGCAAGAGAGCGCAGATATGTACTCAAACTCTCCTCGTTTCTCCTCTGCCGACGAGACCCTTTTGCAGAAGTACCTCCCTTACAACACCGGTCATGATTCTGATGAGGATTCTGATCCCTATTCCTCTGATCGTTTCCGCATGTATGAGTTTAAGATAAGGAGGTGCACGCGTAGCCGCAGCCATGACTGGACTGACTGTCCCTTTGCTCATCCAGGCGAGAAAGCTCGCCGCCGTGATCCGACCATTTATCGTTACTCCGGTACCGTTTGCCCTGAGTATCGCCGTGGTGGGTGTAGCTGTGGGGATAGCTGTGAGTTTGCTCATGGGGTGTTTGAGTCATGGCTTCATCCATCTAGGTACAGAACTGAAGCTTGCAGAGATGGGAAAAACTGCAAGCGAAAGGTATGTTTTTTCGCTCATACTCCTCGTCAACTAAGGATTGTAAGTGAGAATTGCAATGATTCTTTAGCTGAGATGTCATGCAAGAAGAAGCTCAACAGTTGCTTGTTCTGTCACTGTGGCGGCCAAGGTGCTGCTGCCGCCTCCCCAACTTCTACACTGTTGGGTATGTCTCATCTGTCTCCTCCACTGTCACCCTCCCAGTCAATTTCGCCTCCTCTTTCACCAATCAAAGCAAGAAATGCAAGTGTAAGTGGATTTCCTCCTATTTCTCGATATAGTGAGAGATTTGGAGGATCTGAGTCCACAAGCTTAATGAACCCTCACCATGGGCATGGAATGATGAGCTATAAAGATGCGTTAACTGAGCTCATGAGCTCTTTGAAGGCTGTAAAATTCAGTGAAGCTTTGCCTGCTTCACCTATGCCGTCTAACAAAGCACTAACTCTGCCTTGGGTTGATGTTTCATTCAACTGTGATGACCAGCAGCAGTTCATTATTTCACCGTCTACTACTGCATCAGCGTCCGTGTCTGCAAATTCATACAATAGGAATTATTTCAACACCAAGGTCGATGACAACAAGGTCAGCATTGACAGTGGTAGGTCTTGTCCAACCCCAGACCTCGGTTGGGTTAACAGCCTTCTTATGTAG 1176 0.4753 MNSDYAHEQHEFHHSHQLFSSKKSLRDIDIPPRKLLSRRAVQESADMYSNSPRFSSADETLLQKYLPYNTGHDSDEDSDPYSSDRFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPTIYRYSGTVCPEYRRGGCSCGDSCEFAHGVFESWLHPSRYRTEACRDGKNCKRKVCFFAHTPRQLRIVSENCNDSLAEMSCKKKLNSCLFCHCGGQGAAAASPTSTLLGMSHLSPPLSPSQSISPPLSPIKARNASVSGFPPISRYSERFGGSESTSLMNPHHGHGMMSYKDALTELMSSLKAVKFSEALPASPMPSNKALTLPWVDVSFNCDDQQQFIISPSTTASASVSANSYNRNYFNTKVDDNKVSIDSGRSCPTPDLGWVNSLLM* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01860 391 Gene3D - 124 189 - -
Pte15g01860 391 SMART c3hfinal6 125 151 IPR000571 GO:0046872
Pte15g01860 391 SMART c3hfinal6 160 183 IPR000571 GO:0046872
Pte15g01860 391 ProSiteProfiles Zinc finger C3H1-type profile. 125 152 IPR000571 GO:0046872
Pte15g01860 391 PANTHER UNKEMPT FAMILY MEMBER 52 390 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01860 Pte-Chr15 24119167 24120342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01860 77 187 C2H2 Transcription Factor Family AT5G07500 66.667 6.19e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte15g01860 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01860 K23047 - qsa:O6P43_028831 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01860 15 24119167 24120342 Pte15g01860 15 24119167 24120342 RCT