Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01836 ATGAATACAGTTCTGAATTTGCGTATTGATCAGAAAATGGCCTTGGATGAGTACCTTGAGGAGGCAGTAGACCAGATTAACACTCTTGCAGAAGATAAATCTACTTTGAGAAGATGGAATGCAATCTCTGATACTGATGCAAATGAATCTGGAGGTTTTGATTGCAATATCTGCCTGGGTTCTGTGGAAGACCCTGTAGTCACACTCTGTGGTCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTTGATCACTTCCATGGTAGCTCCAGTGAACACCAAGAACATCAACCACCAAAATGCCCTGTCTGTAAAGCAGAGGTTTCTAAGGCTTCATTAGTGCCCCTCTATGGTCGCGGTCAAACTATCAATTCTTCCAAAGACAAGGGTCATCTGATTCCAAGAAGACCTCAAGGTCCAGCATGTAGATTAAACACACAGAGATCAACTCATCCTAGCACAAGTCGTCAACCAGTTCCACAAGTTCATGATCATTATTATCCTTATGCATCCGTCCCGTTTAACTCATTACAAAGCCCTTATACTTCCCATTTTCTAAGGCCTGGGGTCTCCATAACCAATGTATTTGATCCAATATTTGGAGTCTTTGGGGAGATGTTACACACAAGGGTATTTGGGAATTCGGTAACAGGTTTATATACTTATCCAAATAGCTATAATCTTACAGGAAGCGGCAATCCTAGAGTTAGAAGACAAGTGATGCAAGCTGATAAATCACTCAGCAGAATATGTTTTTTTCTATTTTGTTGCGTAGTTCTCTGTCTTCTTCTGTTCTAA 798 0.4123 MNTVLNLRIDQKMALDEYLEEAVDQINTLAEDKSTLRRWNAISDTDANESGGFDCNICLGSVEDPVVTLCGHLYCWPCIYKWLDHFHGSSSEHQEHQPPKCPVCKAEVSKASLVPLYGRGQTINSSKDKGHLIPRRPQGPACRLNTQRSTHPSTSRQPVPQVHDHYYPYASVPFNSLQSPYTSHFLRPGVSITNVFDPIFGVFGEMLHTRVFGNSVTGLYTYPNSYNLTGSGNPRVRRQVMQADKSLSRICFFLFCCVVLCLLLF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01836 265 ProSiteProfiles Zinc finger RING-type profile. 55 105 IPR001841 -
Pte15g01836 265 SMART ring_2 55 104 IPR001841 -
Pte15g01836 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 124 IPR013083 -
Pte15g01836 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 262 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte15g01836 265 Pfam Zinc finger, C3HC4 type (RING finger) 55 85 - -
Pte15g01836 265 MobiDBLite consensus disorder prediction 142 158 - -
Pte15g01836 265 SUPERFAMILY RING/U-box 36 110 - -
Pte15g01836 265 MobiDBLite consensus disorder prediction 120 158 - -
Pte15g01836 265 ProSitePatterns Zinc finger RING-type signature. 70 79 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01836 Pte-Chr15 23604299 23607193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01836 44 266 C3H Transcription Factor Family AT4G28270 40.435 1.54e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01836 K10666 - cave:132182471 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01836 15 23604299 23607193 Pte15g01836 15 23604299 23607193 RCT