Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01820 ATGAAGTATGTACCTCCATATCTCAGGAATTCAAGCTCAACTGCCGTTGCTACACGTACCTTGTCATCTCTAACCCTAGACAACAGCTCCACTGCTTCCTTATCCAATGGCTCTCGACGGAGCACTGTTACTTTCGCTGGACCTGATCCTGTTTTTGCTCACTGGGCGCCTTCTGAACGCGTTTCTCGTATGAGTGCGGAGCAGGTTGAAGAGGTTCGTTTACGGTTGAATGTTGATGTTACTGTTGCTTCTGATTCTCTTCCTGCTCCTGCAGCAATTGAGTCTTTTACGGACATGTGTCTGCATCCAAGCATTATGAAGGATATTACTATTCATGAATATAGTAGACCTACCCCAATTCAGGCGCAGGCTGTGCCTGTTGCTCTCAGCGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGCGGTAAAACTGCAGCTTTCACAATTCCTATGATCCAGCACTGCTTGTTTCAACCTCCTATTAAGCGTGGTGATGGTCCTTTGGCGTTAGTACTTGCCCCAACAAGGGAGCTTGCCCAACAAATAGAGAAAGAGGTTAAAGCTTTCAGCCAATCTCTTGAGGCATTTAAGACTGCATTGGTTGTGGGTGGAACAAATATGGCGGAGCAGAGGTCAGAGTTAAGAGCAGGGGTTAATATTGTGGTTGCTACTCCTGGGAGATTTATTGATCATTTACAACAAAGGAACACTTCTCTTTCTAGGATTTCTTTTATTGTTTTAGACGAGGCAGATAGAATGCTTGACATGGGCTTTGAGCCACAAATTAGAGAGGTGATGAGGAGCCTCCCAGATAAGCATCAAACACTATTATTTAGTGCTACTATGCCAGTGGAGATTGAAGCGTTGGCTCAGGAATACTTGACAAAACCTGTACGAGTGAAAGTGGGAAAAGTGAGTTCCCCAACAGCAAATGTTTCTCAAACTCTCATGAAGGTCTCTGAAAGTGAGAAGATTGATAGACTTCTAGCTCTGCTGGTGGAAGAGTCGTCAGATGCTGAAAATTGTGGCCATCCCTTTCCCTTAACTATTGTGTTTGTGGAGAGGAAGACAAGATGTGAGGAAGTTGTGGAAGCATTGGTGGCACAAGGGTTGCCTGCAGTTTCTCTTCATGGTGGTCGTAGTCAAACTGAGAGGGAAACTGCTTTGCGTGATTTTAGAAATGGCTCTACTAGCATTTTGGTAGCGACTGATGTTGCATCTCGTGGCTTAGATGTCACAGGAGTAGCACATGTTATTAATCTAGATCTTCCCAAGACCATAGAAGATTATGTCCACCGGATAGGAAGAACAGGCCGGGCAGGATCAACAGGCCTGGCTACTTCTTTTTACACTGATCGTGATATGTTTCTTGTGGCACACATAAAGAAAGCAATATCAGATATTGAATCAGGAAATGCTAGTGCTTTTGCTACGGGAAAGGCCGCGAGAAAGAAAGAAAGAGAAGCATCTGCACAAAAAGAATCCAAGTATGCGCTGTCGAAGTTGTCAGCAACGGGACAAACTTCAATGCATATTGAGGACAAATATAGGTTCATGATGGCTGCCTCAGATATGAAGAAGGAGGGTGCAGCGGATAGTGCTTGGGACGATTGA 1617 0.4484 MKYVPPYLRNSSSTAVATRTLSSLTLDNSSTASLSNGSRRSTVTFAGPDPVFAHWAPSERVSRMSAEQVEEVRLRLNVDVTVASDSLPAPAAIESFTDMCLHPSIMKDITIHEYSRPTPIQAQAVPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLFQPPIKRGDGPLALVLAPTRELAQQIEKEVKAFSQSLEAFKTALVVGGTNMAEQRSELRAGVNIVVATPGRFIDHLQQRNTSLSRISFIVLDEADRMLDMGFEPQIREVMRSLPDKHQTLLFSATMPVEIEALAQEYLTKPVRVKVGKVSSPTANVSQTLMKVSESEKIDRLLALLVEESSDAENCGHPFPLTIVFVERKTRCEEVVEALVAQGLPAVSLHGGRSQTERETALRDFRNGSTSILVATDVASRGLDVTGVAHVINLDLPKTIEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVAHIKKAISDIESGNASAFATGKAARKKEREASAQKESKYALSKLSATGQTSMHIEDKYRFMMAASDMKKEGAADSAWDD* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01820 538 CDD SF2_C_DEAD 313 451 - -
Pte15g01820 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 491 IPR001650 -
Pte15g01820 538 SMART helicmild6 361 442 IPR001650 -
Pte15g01820 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 301 IPR014001 -
Pte15g01820 538 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 86 486 - -
Pte15g01820 538 Pfam DEAD/DEAH box helicase 118 288 IPR011545 GO:0003676|GO:0005524
Pte15g01820 538 Gene3D - 307 501 IPR027417 -
Pte15g01820 538 FunFam probable ATP-dependent RNA helicase DDX17 53 304 - -
Pte15g01820 538 Gene3D - 53 305 IPR027417 -
Pte15g01820 538 CDD DEADc 114 302 - -
Pte15g01820 538 Coils Coil 180 200 - -
Pte15g01820 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 462 IPR027417 -
Pte15g01820 538 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 94 122 IPR014014 GO:0003724
Pte15g01820 538 Pfam Helicase conserved C-terminal domain 325 442 IPR001650 -
Pte15g01820 538 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 247 255 IPR000629 -
Pte15g01820 538 SMART ultradead3 113 316 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01820 Pte-Chr15 23064943 23079421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01820 94 464 Eukaryotic Initiation Factors Gene Family AT1G72730 35.561 1.73e-70 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01820 K12823 - qsa:O6P43_020458 837.025