Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01818 ATGGAAGCAGAGTGTGCGTTGAAATTTCAGAATCTCCTACCTGTAGAGATGGCGTTGTCGAGCACAGAGTGTGCGTTGAAGGCAAAGTGGCTTTCGAAGATGCATTTGCACTGTGAAGCAGCCTCCAGAATAGTCAGTTTGTTTTGGACTAAGAAGCCATCATTCAAGGGGTTGGACACTACCTCAGCCAAACCTGCCGCCAACGACATGATCATGGTATCTCCACCGACGTTGCCGCTCGGTGGCCGGACTGTCACACCTTTTGAGGTGGGGTTTGCCTTGAAGAATAGCCAGTCACATTCACCCGGGCACATGTTAAACGAAGAGAAGAAGCTCCGGGTTCTCTGTTTCAAAGAGGCTATTGAATGCATGAGCGAAGGGAAGAAAGACGAAAGACATTATGCTGATAGAAGGGCTATACGATCGGAGATGGAAGTATTTGAGGAGAGTGGAAAAATACCTGTTTTCAAAGACATTAGACGTTATTTCTGTGAATACTGTGGCATATGCAGGTCGAAGAAGACCTTGATTGCCTCACACATTTGCAGTCATCACAAGGATGAAAGTCAAAAGGAAAAGGGTAATGGCAATGGAGAGCCACAGGTTGTAAAATCTAACACCTGTGCGGAATGTGGTATTAGTTTCAAGAAACCTGCACACTTGAGGCAGCATATGCAAAGTCACTCCCTGGAGAGGCCATATAAGTGTCACATAGATGGTTGTCATTCAAGTTTCAGAAGAAAAGACCACTTGACTCGCCACCTTCTACAACATGAGGGAAAGCTCTATGAGTGTCCAACTAGGGATTGCAACAAGGATTTTACTTTGGAGAGCAACATGAAAAGACATGTCAAAGAATTGCATGATGAAGGTGCCTCCCTGATAAAAAATGGAGGTCCAAAGATGTTTGTTTGCCCAGAGAGTGGTTGTGGAAAGGTGTTCCATTATGCTTCAAAGTTACGAAGCCATGTGGAGACTCACATTAAGCTGGAATCAGTTGAGGCCATATGTCTAGAACCTGATTGTATGAAACCATTTGCAAATGTGAAATGCCTTAGGGCGCATGTTCAATCCTGCCATGGGTATATAACTTGCAAGATTTGTGGGCAGAGACAATTGAAAAAGAATATGAAGCGACACCTCCATATACATGAAACTGGTGGTTCCTTGGAGAGAATTAAATGTGAATTCAAGGGATGCCTCCTCAAATTCTCAAATATGTCAAATCTTCGCACACATGTGAAGGCTGTGCATTTTAAAAAGAAACCTTTTGTGTGTGGTTTTTCTGGTTGTTCCATGAAATTCTCCTACAAACATGTGAGAGACAACCATGAGAAAACGCATGTTTATTCCCCTGATTTCGTGGAGTCTGACTTGCAATTCCAGTGGAAACCTCGTGGATGCAGGAAGAGAACATGCCCAAATATGGAAATGTTGATTAGGAAGAGAGTTACTCCACCAAGTCAGTGGGAATCTTGGTTACTTGGTCATGAATCTGACTAA 1503 0.4358 MEAECALKFQNLLPVEMALSSTECALKAKWLSKMHLHCEAASRIVSLFWTKKPSFKGLDTTSAKPAANDMIMVSPPTLPLGGRTVTPFEVGFALKNSQSHSPGHMLNEEKKLRVLCFKEAIECMSEGKKDERHYADRRAIRSEMEVFEESGKIPVFKDIRRYFCEYCGICRSKKTLIASHICSHHKDESQKEKGNGNGEPQVVKSNTCAECGISFKKPAHLRQHMQSHSLERPYKCHIDGCHSSFRRKDHLTRHLLQHEGKLYECPTRDCNKDFTLESNMKRHVKELHDEGASLIKNGGPKMFVCPESGCGKVFHYASKLRSHVETHIKLESVEAICLEPDCMKPFANVKCLRAHVQSCHGYITCKICGQRQLKKNMKRHLHIHETGGSLERIKCEFKGCLLKFSNMSNLRTHVKAVHFKKKPFVCGFSGCSMKFSYKHVRDNHEKTHVYSPDFVESDLQFQWKPRGCRKRTCPNMEMLIRKRVTPPSQWESWLLGHESD* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01818 500 Gene3D Classic Zinc Finger 300 327 - -
Pte15g01818 500 FunFam Zinc finger protein 574 204 229 - -
Pte15g01818 500 Gene3D Classic Zinc Finger 235 259 - -
Pte15g01818 500 ProSitePatterns Zinc finger C2H2 type domain signature. 395 418 IPR013087 -
Pte15g01818 500 Gene3D Classic Zinc Finger 149 234 - -
Pte15g01818 500 SUPERFAMILY beta-beta-alpha zinc fingers 261 327 IPR036236 -
Pte15g01818 500 ProSitePatterns Zinc finger C2H2 type domain signature. 236 258 IPR013087 -
Pte15g01818 500 PANTHER ZINC FINGER PROTEIN 139 485 - -
Pte15g01818 500 ProSitePatterns Zinc finger C2H2 type domain signature. 305 327 IPR013087 -
Pte15g01818 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 332 IPR013087 -
Pte15g01818 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 288 IPR013087 -
Pte15g01818 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 233 IPR013087 -
Pte15g01818 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 263 IPR013087 -
Pte15g01818 500 ProSitePatterns Zinc finger C2H2 type domain signature. 337 360 IPR013087 -
Pte15g01818 500 ProSitePatterns Zinc finger C2H2 type domain signature. 265 288 IPR013087 -
Pte15g01818 500 Gene3D Classic Zinc Finger 389 475 - -
Pte15g01818 500 Pfam Zinc finger, C2H2 type 263 288 IPR013087 -
Pte15g01818 500 Pfam Zinc finger, C2H2 type 234 258 IPR013087 -
Pte15g01818 500 Pfam Zinc finger, C2H2 type 303 327 IPR013087 -
Pte15g01818 500 Pfam Zinc finger, C2H2 type 207 228 IPR013087 -
Pte15g01818 500 SUPERFAMILY beta-beta-alpha zinc fingers 374 430 IPR036236 -
Pte15g01818 500 ProSitePatterns Zinc finger C2H2 type domain signature. 426 448 IPR013087 -
Pte15g01818 500 SMART c2h2final6 424 448 IPR013087 -
Pte15g01818 500 SMART c2h2final6 363 384 IPR013087 -
Pte15g01818 500 SMART c2h2final6 162 184 IPR013087 -
Pte15g01818 500 SMART c2h2final6 263 288 IPR013087 -
Pte15g01818 500 SMART c2h2final6 335 360 IPR013087 -
Pte15g01818 500 SMART c2h2final6 206 228 IPR013087 -
Pte15g01818 500 SMART c2h2final6 393 418 IPR013087 -
Pte15g01818 500 SMART c2h2final6 234 258 IPR013087 -
Pte15g01818 500 SMART c2h2final6 303 327 IPR013087 -
Pte15g01818 500 SUPERFAMILY beta-beta-alpha zinc fingers 214 266 IPR036236 -
Pte15g01818 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 393 423 IPR013087 -
Pte15g01818 500 ProSitePatterns Zinc finger C2H2 type domain signature. 208 228 IPR013087 -
Pte15g01818 500 Gene3D Classic Zinc Finger 260 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01818 Pte-Chr15 22932990 22937587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01818 230 451 C2H2 Transcription Factor Family AT1G72050 43.116 4.11e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g01818 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01818 K09191 - qsa:O6P43_001489 518.85