Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01786 ATGGAAAAAGCACTTGGTGCAATTCAATGTCCTTCTGAGGCCTCTAGCATCTCTGCTGCCTCAGAGGGCAACTCATTCAAAGGATCAGGCAATAGCAGTGTTGATGAAAAGAGTATCAAACTGATGAGCACTTCAACTGATCGTCACAAGAACATGATGATAATCCAATCTGAAGGAGAAGACTCGAGATCTGATTCTCGTCTCTTCCTTGATTTGATCAGGGCTCCTCATGATGAACCCAATCGTGGATCAAAGGTTGAACTCAATTTCTTCAACCCCACACATTTGGGTTCATCGTCTAGGGCTAATGAAAAAGGTCCAGATGACAAGGATGGCTCGTCTGAGGCTAGTAGGACTTTCTCATGCAACTTTTGCAAGAGAGAGTTCTCTACTTCACAGGCACTAGGAGGTCATCAAAACGCTCACAAGCAAGAGCGTGCTCTTGCAAAAAGGAGACAAGGGATGGATGTTGGTCCTTATGGGCATCCACACTATCCTTATTATCCTTATTCAAGTTTGCCTACGCACTCTTATTACGGTTCATTGATTAACAGGTCTTCTCTTGGGGTTAAGCTTGACTCCATGATTCATAAGCCTTCCTTTGGATGGACCCCACATGGTTACAGACTCAACAATGGTGGAGGGTGGCCTTCAAGACCAAACATTCTGAACTCATCATCATCGCCTATGTCACTTGACAGGCTAAGGACAATAGAGGGTTTCCAAGCAAACAACCGTGGAATTGGAACCCTAGCAGGTAATACTCCTGCTGCTGCAGCAGCCACAACTACACCATCGTTAAAATCAATTGAGGAAAGTGGGTTTCTCCGCCTCTTGAAAGGTGCAAATTCAGCCACTGCAGATACATCAAGTTTAACCATGAACAAGTCAGTTGGAGTAACTGATGGTGATCATCATGATCATCGGAAAATCGACAACATTGAATCTGCTGGACTTGATCTATCTCTTAAGCTCTAG 978 0.4438 MEKALGAIQCPSEASSISAASEGNSFKGSGNSSVDEKSIKLMSTSTDRHKNMMIIQSEGEDSRSDSRLFLDLIRAPHDEPNRGSKVELNFFNPTHLGSSSRANEKGPDDKDGSSEASRTFSCNFCKREFSTSQALGGHQNAHKQERALAKRRQGMDVGPYGHPHYPYYPYSSLPTHSYYGSLINRSSLGVKLDSMIHKPSFGWTPHGYRLNNGGGWPSRPNILNSSSSPMSLDRLRTIEGFQANNRGIGTLAGNTPAAAAATTTPSLKSIEESGFLRLLKGANSATADTSSLTMNKSVGVTDGDHHDHRKIDNIESAGLDLSLKL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01786 325 SUPERFAMILY beta-beta-alpha zinc fingers 117 147 IPR036236 -
Pte15g01786 325 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 325 IPR044246 GO:0009788
Pte15g01786 325 MobiDBLite consensus disorder prediction 87 101 - -
Pte15g01786 325 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Pte15g01786 325 MobiDBLite consensus disorder prediction 1 50 - -
Pte15g01786 325 MobiDBLite consensus disorder prediction 77 117 - -
Pte15g01786 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Pte15g01786 325 Gene3D Classic Zinc Finger 108 157 - -
Pte15g01786 325 MobiDBLite consensus disorder prediction 11 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01786 Pte-Chr15 21549894 21550871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01786 12 200 C2H2 Transcription Factor Family AT5G10970 35.263 1.93e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g01786 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01786 - - gmx:102661483 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01786 15 21549894 21550871 Pte15g01786 15 21549894 21550871 RCT