Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01773 ATGGGTCATTCCACTAATGAGAATGAAGGAGCCGCCTCCAAGGATCAGGATGGATTACAATTGAATGACGATAGTCAAGGTGAAGATGCTTGTGGAGTAATTCTGAAGAAGGGGCCTTGGACATCTGCGGAAGATGCTATTTTGATCGATTACGTCAAGAAGCATGGGGAAGGGAACTGGAATGCTGTCCAAAAGCACTCAGGCTTGTCTCGTTGCGGAAAAAGCTGCCGGCTCCGATGGGCAAATCATCTTAGGCCTAATTTAAAGAAAGGAGCTTTTACAGCTGAGGAGGAACGATTAATTGCTGAGCTACACGCCAAGATGGGAAACAAATGGGCTCGTATGGCTGCTCATTTGCCTGGCCGTACTGACAATGAGATAAAGAATTATTGGAATACACGGATTAAGAGGCGTCAAAGAGCTGGTTTACCACTCTACCCTCCTGAACTGTGTCTGCAAGCATTCCAGGAGCAGCATGGACAACTTAATGGTGGAATTGATGGTGCAGATAGAGGACTTACAGATCTGAAGAAAAGTTATGAGATACCTGATGTCATGTTTGATGGTTTGAAAACCAACCAGGCTATCTTCCATTATATGCCTGATCGATCAGAAATTTCCACAAATCACATGTTGCTGAGAGGTTATGGTCCTTCTCAGTATTATAGTATCATGCCAGCAACGATGCCTCATCAGAAACGACTTCGTGAATCAATAGTCCCACTCACTGGCTCTGGTAATAGTGTCAAGAATGAATTCTTTCCAATTGACCAATTTCAATCACATGGAATATCTTCGCTTGACCCTGTTCCTACTTCAGACAATTCAATGTCCTTTAGCCATTCACACTCCAATGGCAATTCCTCTGCTTCACAGCATACATTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAACTAGCTGGGGTACTTCTCCAAACCCTCTTCCTCTATTTGAGTCAGTTGATGCTTTCATTCAGTCTCCTCCTGCTGCTAGTGTTCAGGAGTCATATAATTCTTCACCACGTAATAGTGGACTGCTGGATGCTTTACTTCATCAGGCAAAGACTCTAAGTGGTGTGAAAAATCATTCTTCGGACAAGGTTTCTAACTCTTCTAGTACAACTCCACATGACAATGCCGAGAGTTCACCATTGGACATGTGTGAGACAGAGTGGGAAGACTATGCTGATCCTATATCTCCTTTTGGTCACTCTGCCACCTCATTTTTTGATGAATGCGCTCCTATTAGTGCCAACAGAAGTTCGATGGATGAAGAGAATCTGAATGCAGAAAACATAAAGTCAGAACCAATTGATCAGCCCGGGACCTCAAATTGTGAAAGTTTTACGCCATCTTCGCTAAACACTATGAGGCCTGATGCTTTGCTTGCTTCAGATTGGCTTGAGCGAAATTCTGGGTATGCAAAGAACCATGGCGTAGTGACTGATAGTTTTACAACCCTTCTTGGCGATGATTTGGCCACAGACTATGAGCACATGACAACTGCAACTACTGCATCTAGTCACGGATGGGGTATTGATTCTTGCACATGGAATAACATGCCTGCCGTCTGTCAAATGTCTGATTTTCCTTGA 1617 0.4378 MGHSTNENEGAASKDQDGLQLNDDSQGEDACGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPELCLQAFQEQHGQLNGGIDGADRGLTDLKKSYEIPDVMFDGLKTNQAIFHYMPDRSEISTNHMLLRGYGPSQYYSIMPATMPHQKRLRESIVPLTGSGNSVKNEFFPIDQFQSHGISSLDPVPTSDNSMSFSHSHSNGNSSASQHTFEAVKLELPSLQYPETDLTSWGTSPNPLPLFESVDAFIQSPPAASVQESYNSSPRNSGLLDALLHQAKTLSGVKNHSSDKVSNSSSTTPHDNAESSPLDMCETEWEDYADPISPFGHSATSFFDECAPISANRSSMDEENLNAENIKSEPIDQPGTSNCESFTPSSLNTMRPDALLASDWLERNSGYAKNHGVVTDSFTTLLGDDLATDYEHMTTATTASSHGWGIDSCTWNNMPAVCQMSDFP* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01773 538 MobiDBLite consensus disorder prediction 1 20 - -
Pte15g01773 538 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Pte15g01773 538 Gene3D - 92 138 - -
Pte15g01773 538 FunFam MYB-related transcription factor 36 89 - -
Pte15g01773 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Pte15g01773 538 MobiDBLite consensus disorder prediction 365 392 - -
Pte15g01773 538 SMART sant 36 86 IPR001005 -
Pte15g01773 538 SMART sant 89 137 IPR001005 -
Pte15g01773 538 CDD SANT 39 84 IPR001005 -
Pte15g01773 538 CDD SANT 92 133 IPR001005 -
Pte15g01773 538 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 8 493 - -
Pte15g01773 538 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Pte15g01773 538 FunFam Transcription factor GAMYB 92 138 - -
Pte15g01773 538 MobiDBLite consensus disorder prediction 264 293 - -
Pte15g01773 538 Gene3D - 36 89 - -
Pte15g01773 538 ProSiteProfiles Myb-like domain profile. 35 84 IPR001005 -
Pte15g01773 538 MobiDBLite consensus disorder prediction 1 25 - -
Pte15g01773 538 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Pte15g01773 538 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Pte15g01773 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Pte15g01773 538 MobiDBLite consensus disorder prediction 365 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01773 Pte-Chr15 20266108 20269421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01773 32 539 MYB Transcription Factor Family AT5G06100 41.588 2.09e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte15g01773 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01773 K09422 - qsa:O6P43_029762 681.404