Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01729 ATGAAAATGGCTCCGAGGGAAAGACTCAGTTCTTTCAACGGATCTAGTCTTGAGCCCAATAACAAGGAAATCAGATACAGAGGTGTGAGGAAGCGTCCATGGGGTAGGTATGCTGCTGAGATACGAGACCCAACGAAGAAGACGCGTATCTGGCTGGGTACCTTTGACACAGCCGAGGAGGCGGCGCGTGCCTATGACGCGGCTGCTCGTGAGTTTCGTGGTGTGAAGGCGAAGACTAATTTCCCCACTCCACCGGAGCTTGCCGTGAACAGCACCCCGACCTTCGTTCGCAGCCCTAGCCAGAGCAGTACCCTGGATTCTTCTTCACCTCCACCACCGTTAGACCTCACTCTGAGACCACTGTCTGCCACTGGCTCTTTTGATTTCCCGGTAATCCCTGTAGCTCGCCCCGTTGTATACTTTGACGCATTCGCTCGTACTGCGCCATGGATGGTGCGTCGTGAGATGTGCCCTCGCCCTGTGACAGACTTCCTCCAAGTAGTGGGAGGTGTGAGAGCCGGCAGTGTTGTTCAGAACGACTCCGAGTCTTCGTCTGTGGTTGGTTACGATCATGTGTCACCCAAAAGGCTCGTAGATCTTGATCTAAATCTGCCTCCTCGACCTGAGGTTGCTTGA 636 0.5425 MKMAPRERLSSFNGSSLEPNNKEIRYRGVRKRPWGRYAAEIRDPTKKTRIWLGTFDTAEEAARAYDAAAREFRGVKAKTNFPTPPELAVNSTPTFVRSPSQSSTLDSSSPPPPLDLTLRPLSATGSFDFPVIPVARPVVYFDAFARTAPWMVRREMCPRPVTDFLQVVGGVRAGSVVQNDSESSSVVGYDHVSPKRLVDLDLNLPPRPEVA* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01729 211 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Pte15g01729 211 MobiDBLite consensus disorder prediction 80 114 - -
Pte15g01729 211 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Pte15g01729 211 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Pte15g01729 211 MobiDBLite consensus disorder prediction 84 111 - -
Pte15g01729 211 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Pte15g01729 211 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Pte15g01729 211 FunFam Ethylene-responsive transcription factor 2 25 83 - -
Pte15g01729 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 152 - -
Pte15g01729 211 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Pte15g01729 211 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Pte15g01729 211 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Pte15g01729 211 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01729 Pte-Chr15 17976667 17979003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01729 20 142 AP2-EREBP Transcription Factor Family AT3G15210 62.774 3.87e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte15g01729 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01729 K09286 - qsa:O6P43_029132 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01729 15 17976667 17979003 Pte2g00838 2 7471692 7473440 RCT
Pte15g01729 15 17976667 17979003 Pte15g01729 15 17976667 17979003 RCT