Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01716 ATGGAGGCCGTGGTGGTCGACGCTGGCTCCAAGCTACTCAAAGCAGGACCCGCCATCCCAGACCAAGTTCCTTCCATGATAATTCCTACCCAGATGAAACGCATGGTTGAAGATGGAACTGTGACTGACAATTCATTAGTTGATGATATAACTGTACATCCAGTTGAGCGAGGATTTATTAGAGATTGGGATGCAATGGAAGATCTGTTGCACCATGTATTATATACTGGCCTTGGATGGGAAATGGGAAATGAAGGACAAATTTTATTTACAGATCCGCTCTGTACACCAAAGTCTGTGAAAGAGCAACTGGTGCAGCTAATGTTTGAAACATTCAACATATCAGGCTTCTATGCATCAGAACAAGCAGTGTTATCACTAAATGCTGTAGGGCGTATATCAGGATGCACTGTTGATATTGGTCATGGGAAAATAGATATTGCACCGGTGCTTGAAGGTGCTGTTCATCACATTGCCTCAAGAAGACTTGAAATTGGAGGCCTTGATTTGACAAAATTTCTTGCTCAAGAACTTGGAAAATCAAATCCTCATGTGAATGTTAGTATGTCTGATATTGAGAAAATAAAAGAGCAATACTCATGTTGTGCTGAGGATGAATTAGCTTATGAGAAGACCAAAAATTGCCCTGTTGAGGAACACAAACTTCCTGATGGGCAGGTGATAAGAATCGGCAGAGAAAGATATGCTGTTGGTGAGGCTTTATTCCAACCATCTCTATTGGGTTCAGAGTCACATGGAATTGTGGAGCATCTCGTTCGTTGTCTTTCAACTGTGTCTTCTGATAATCATAGACAACTCTTGGAAAACACTGTCCTTTGTGGTGGCACCTCTTCGATGATTGGCTTTGAAGATAGATTTCAGAAAGAAGCTAATCTTTGCTCATCTGCAGTTCGGCCAGCGCTTGTTAAGGCCCCAGAATATATGCCTGAAAATCTGATACAGTATTCAGCATGGGTGGGAGGGGCCATACTTGCCAAGGTAGTGTTCCCTCAAAATCAACATGTAACTAAGGCTGACTATGACGAAACTGGGCCCTCCATTGTTCACCGGAAATGCTTCTGA 1083 0.4266 MEAVVVDAGSKLLKAGPAIPDQVPSMIIPTQMKRMVEDGTVTDNSLVDDITVHPVERGFIRDWDAMEDLLHHVLYTGLGWEMGNEGQILFTDPLCTPKSVKEQLVQLMFETFNISGFYASEQAVLSLNAVGRISGCTVDIGHGKIDIAPVLEGAVHHIASRRLEIGGLDLTKFLAQELGKSNPHVNVSMSDIEKIKEQYSCCAEDELAYEKTKNCPVEEHKLPDGQVIRIGRERYAVGEALFQPSLLGSESHGIVEHLVRCLSTVSSDNHRQLLENTVLCGGTSSMIGFEDRFQKEANLCSSAVRPALVKAPEYMPENLIQYSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHRKCF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01716 360 PANTHER ACTIN 3 353 IPR004000 -
Pte15g01716 360 Gene3D Actin; Chain A, domain 4 165 251 - -
Pte15g01716 360 FunFam Actin-related protein 7 4 127 - -
Pte15g01716 360 Pfam Actin 2 360 IPR004000 -
Pte15g01716 360 Gene3D - 123 323 - -
Pte15g01716 360 SMART actin_3 1 360 IPR004000 -
Pte15g01716 360 FunFam Actin-related protein 7 165 251 - -
Pte15g01716 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Pte15g01716 360 CDD NBD_sugar-kinase_HSP70_actin 4 166 - -
Pte15g01716 360 PRINTS Actin signature 45 67 IPR004000 -
Pte15g01716 360 PRINTS Actin signature 216 232 IPR004000 -
Pte15g01716 360 PRINTS Actin signature 100 113 IPR004000 -
Pte15g01716 360 PRINTS Actin signature 125 144 IPR004000 -
Pte15g01716 360 Gene3D - 4 354 - -
Pte15g01716 360 SUPERFAMILY Actin-like ATPase domain 131 360 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01716 Pte-Chr15 17690911 17698830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01716 1 361 Cytoskeleton Gene Families AT3G12110 36.316 9.83e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01716 K16615 - csav:115714630 642.499