Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01713 ATGTTCTTAGAAACAATTTTTCGTCCATCTTTTCCATTTGAGTATGCTCTCACTGTTGATATTCTAATCGCCATATTCTTCTGCGTCATAGTAGCTCTGTTCTTATTCATCCTCCAACACATTCTCATTGAATTATTTCAATGGTTCTGGGAACTAGAAATGCCTGGTCAGCAAGATCTTGAAGAAGGAACACATGCTGATCAAGCTGTCTCAAACTCGTCTCAGCAGGCTGCATTTCTTCAAGTCATGGTCCAAACCAATCTGCAGGTGCTGAGAATGTTGGAAACAATCATGAGGGATATAGAGGAAAGGCGAGGGATTCGACAAATAGCCATGGCAAAATTGCCACCTCTGGTGAATTATGGAAGCCATAATCATGAAGCAACGAGTTGTATTGTATGTACCATATGCTTGGAGGACTTCCAGTTTGGAGAGCCTTGTCAAGTTTTTCCAGTGTGCAAACATATTTTTCATTCTGGCTGCATCAATGACTGGTTGAAGAAGAAGCTTACCTGTCCTGTTTGTCGATATTGTATAAAAGATAAATGA 549 0.4026 MFLETIFRPSFPFEYALTVDILIAIFFCVIVALFLFILQHILIELFQWFWELEMPGQQDLEEGTHADQAVSNSSQQAAFLQVMVQTNLQVLRMLETIMRDIEERRGIRQIAMAKLPPLVNYGSHNHEATSCIVCTICLEDFQFGEPCQVFPVCKHIFHSGCINDWLKKKLTCPVCRYCIKDK* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01713 182 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Pte15g01713 182 SMART ring_2 134 175 IPR001841 -
Pte15g01713 182 Pfam Ring finger domain 134 176 IPR001841 -
Pte15g01713 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 181 IPR013083 -
Pte15g01713 182 SUPERFAMILY RING/U-box 133 180 - -
Pte15g01713 182 CDD RING-H2_PA-TM-RING 133 176 - -
Pte15g01713 182 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 177 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01713 Pte-Chr15 17670196 17670744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01713 103 176 C3H Transcription Factor Family AT1G53010 43.038 6.40e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01713 - - cave:132174479 169.088