Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01654 ATGGATCAGATAATTGAGTCAGAAATGGATCAGCAGTCGGCAGGTGTACTGCCTGTCCCTCTGAATCATGGAGCTCAGGATCAGTCATCAGCTTCAAGCTCCTATTCAGTTGCTGGTGTTAGTGATAATTCTGGAAGGGGCAGTCCTTTAGTGGAGGATGTTAGAGGTCCATGCAAGGGAAAAAGCGAGGGCTTTCAGTATTGCAATGCATCTGCAAGTTCCAGTTCTGCGGTTGCTCCTCAGCATATCAGACATTCTGATAGAGGTGGCATTAGGGATGCATCATCTTTCTCCATACCTCAATTTAGAGGAAGCACCACTGCTTCACTTATGGAGGTAGGACTTCAGACAAATCTCTGGACCAGGTCAACAGATTCACATATGGTGCCACACAATAATCATTTGATTCATGGAAACTACGTGGGACAATGCTTTCAGCCAGCTGCTGGTCTTTGGATTGATCAGCAGTTAAGCACTAATAACATCGATGGGCACAATGCAGCTTGGAATCAGTCTCTTTCTGTGCCATATGTACAAGCAATCGATGTTAGCAGAAGTGCCTTAGAAAGTAGGAATATGGGTTTGGCAAGATATCATGACACAGCTAACAATAGATCTGGACCAAGGTTTCTGCCTCATCCTCCTGTGAACCAACACCTCCACCATCATGGATATCATCCTTCATCCCTGCATATGCAAGTAGGAAGAGCCCAAAATGTAATCTTTCATCCTCATTTAATCACTTCCTCATATTGGAATCCATCATATTCTACAAGGAGCACTGTTCTTCCTGCACAGAACAGTTTTGAGATGGGTGCTCGACATCTGAGACCTGTTCCTCAAGGTGGCACTGGGGCATACCATCCTCACAGAAGCAGTGTCATGATTGAAGCAAATCTTGGACATCATAATGTGCCACGGTTAAGAGTCCTCCCTTCTGAAGATTTAGCTCCACTAGACCTGCAAGAGTATTATGAAGGGGGTGATCTGATTGATCATCACGGGGATATGCGCCTGGACATAGACCACATGTCTTATGAGGAGTTGCTTGCATTGGGAGAGTGGATTGGCAACGTGAACACTGGTTTATCAGAGGAAACGATTATGAGTAGATTGAAGACAAAAACTTTTGTAGCAGCTGCTGCTTCTATCAATTTGAAGGAGGCAGTCAGTGAAGAACAAGAAAATGAATCATGTATCATATGCCAGGAGGAGTACAAAAACAGAGAGAAGGTTGGAGTTCTTGAATGTGGGCACGAGTACCATATAGACTGCTTGAAGAAATGGTTGCTTGTGAAAAATGTCTGCCCTATTTGCAAAAAAATTGGCCACTGGCAAGAAGGATCTACGTAA 1353 0.442 MDQIIESEMDQQSAGVLPVPLNHGAQDQSSASSSYSVAGVSDNSGRGSPLVEDVRGPCKGKSEGFQYCNASASSSSAVAPQHIRHSDRGGIRDASSFSIPQFRGSTTASLMEVGLQTNLWTRSTDSHMVPHNNHLIHGNYVGQCFQPAAGLWIDQQLSTNNIDGHNAAWNQSLSVPYVQAIDVSRSALESRNMGLARYHDTANNRSGPRFLPHPPVNQHLHHHGYHPSSLHMQVGRAQNVIFHPHLITSSYWNPSYSTRSTVLPAQNSFEMGARHLRPVPQGGTGAYHPHRSSVMIEANLGHHNVPRLRVLPSEDLAPLDLQEYYEGGDLIDHHGDMRLDIDHMSYEELLALGEWIGNVNTGLSEETIMSRLKTKTFVAAAASINLKEAVSEEQENESCIICQEEYKNREKVGVLECGHEYHIDCLKKWLLVKNVCPICKKIGHWQEGST* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01654 450 Pfam Ring finger domain 398 440 IPR001841 -
Pte15g01654 450 SUPERFAMILY RING/U-box 393 443 - -
Pte15g01654 450 CDD RING-H2_RNF24-like 397 441 - -
Pte15g01654 450 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 72 441 IPR045191 GO:0061630
Pte15g01654 450 MobiDBLite consensus disorder prediction 23 43 - -
Pte15g01654 450 ProSiteProfiles Zinc finger RING-type profile. 399 440 IPR001841 -
Pte15g01654 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 443 IPR013083 -
Pte15g01654 450 SMART ring_2 399 439 IPR001841 -
Pte15g01654 450 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01654 Pte-Chr15 14658628 14664445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01654 291 440 C3H Transcription Factor Family AT2G15530 45.333 7.67e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01654 K19041 - qsa:O6P43_001011 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01654 15 14658628 14664445 Pte15g01654 15 14658628 14664445 RCT