Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01647 ATGGATCCCTTCAAAAAGCGAAAGATCGAGGAAAACGGTGTGGTTCCCACTGATTCCGATCCCCCAAATTTCAATAAGCTAACCCCATGGGACATTCGTAAAATCATCGAACGCTTCAACCAGGACCAGCTCCTAGACATACTCCAAGAGGCCGTCCTCCGTCATCCCGACGTCCTCGATGCCGTAAGATCAGTCGCAGACCCAGATGTCACTCAGCGCAAGCTCTTCATTCGTGGTCTTGGTTATGACACCACCACCGATGGCCTCCGCAACCTCTTCTCCACCTATGGGGAACTCGAAGAAGCTGTGGTGATACTCGATAAGATAACTGGGAAATCCAAAGGTTATGGCTTCGTTACTTTCAAGCATGTTGATGGTGCTTTGCTGGCTCTCAAAGAACCAAGCAAGAGGATTGATGGGCGAGTTACCGTCACGCAGCTAGCAGCTGCTGGTAATACCGGGTCCAATACTAATCCGATTGATATCTCGGTTAGGAAGATCTATGTTGCTAATGTGCCACCCGATCTATCAGCGGATAAACTGTTAGCTCACTTTTCTTTCTATGGTGAAATTGAAGAAGGGCCCTTGGGTTTTGATAAGCAGACAGGTAAGTCAAAAGGCTTTGCCTTGTTTGTATATAAGACTGCAGAGGGTGCTCAAGCTGCACTTGTCGACCCGGTGAAGATTGTAGAGGGTAAGCAGCTCAACTGTAAGTTGGCTATCACGGATAATAAAAAGGGGAAGCCAGGTGGTGGACCTGATGGAGTGCATGGTCATGGAAATGCTCATGGATATGGCATGGTTATGCAGCCACCGCCATCATCAATTACAGGACAATATGCTGGCGCTGGGGGGTTGGGGTCATATGCTGGATATGGAGGTGGGATCCAGGGGCAGCCTTTAATTGGCAATCATCCAATGAATTCATCCTACGGTGGACCGGGTTTGACGTCAATGGGCAATCAGCCACCGTCTTCTCTGGCTGTCACTAGTGGGTATGGTTCTGGGCTTGGTGGACCTTATGGTAGTTATGGTGGAATGAGTGGTTCAGGGGCTGCTATGGGCATTGGTGGCAGTGGTTTTGGTATCGGTTCTGGTGCTGGATTTGGTGTTTCGGGTGGTGGGCTGAGTGGTGCTACAGGAGGCTCTGCGTCTTCTCTATATAAGTTGCCTCCGAGTTCAACTGGAATGCCGAGTAATGGATACCCGGAGACTGGCCATTTTAGTTCGTCGTCATCTTCTGCCTATCCAGGACAGCAACCGGTTGGAGCTTCACCAGTGCCAAGGGTTCCAACGGGTGGGGTTTACCAGAATGCACCCCACTTCTACTGA 1332 0.5008 MDPFKKRKIEENGVVPTDSDPPNFNKLTPWDIRKIIERFNQDQLLDILQEAVLRHPDVLDAVRSVADPDVTQRKLFIRGLGYDTTTDGLRNLFSTYGELEEAVVILDKITGKSKGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNPIDISVRKIYVANVPPDLSADKLLAHFSFYGEIEEGPLGFDKQTGKSKGFALFVYKTAEGAQAALVDPVKIVEGKQLNCKLAITDNKKGKPGGGPDGVHGHGNAHGYGMVMQPPPSSITGQYAGAGGLGSYAGYGGGIQGQPLIGNHPMNSSYGGPGLTSMGNQPPSSLAVTSGYGSGLGGPYGSYGGMSGSGAAMGIGGSGFGIGSGAGFGVSGGGLSGATGGSASSLYKLPPSSTGMPSNGYPETGHFSSSSSSAYPGQQPVGASPVPRVPTGGVYQNAPHFY* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01647 443 Gene3D - 159 271 IPR012677 -
Pte15g01647 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Pte15g01647 443 MobiDBLite consensus disorder prediction 1 22 - -
Pte15g01647 443 MobiDBLite consensus disorder prediction 303 324 - -
Pte15g01647 443 MobiDBLite consensus disorder prediction 390 420 - -
Pte15g01647 443 SUPERFAMILY RNA-binding domain, RBD 157 264 IPR035979 GO:0003676
Pte15g01647 443 SMART rrm1_1 166 238 IPR000504 GO:0003723
Pte15g01647 443 SMART rrm1_1 74 146 IPR000504 GO:0003723
Pte15g01647 443 PANTHER GEO13361P1-RELATED 56 305 - -
Pte15g01647 443 FunFam UBP1-associated protein 2C isoform A 56 159 - -
Pte15g01647 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Pte15g01647 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 224 IPR000504 GO:0003723
Pte15g01647 443 Gene3D - 49 158 IPR012677 -
Pte15g01647 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 167 IPR000504 GO:0003723
Pte15g01647 443 MobiDBLite consensus disorder prediction 390 431 - -
Pte15g01647 443 SUPERFAMILY RNA-binding domain, RBD 65 149 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01647 Pte-Chr15 14569007 14572149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01647 161 254 C2H2 Transcription Factor Family AT2G19380 38.298 1.92e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01647 K12741 - qsa:O6P43_001025 546.969