Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01632 ATGCACAAACCAACTTATGTTTCTAATTTTCGTTCTTGGAGGTCCTCCAGTTCATTCAAGGAGACAAGAAGTGCGGAGGAAGATCAGGGAAGGAACAGACTCATTCCTGATTTAGCCGAGCCAGATGAGTATGGGACCTCGTGGTCTTCCTTATTGCCTGAGCTCCTGGGAGAGATCCTACAGCGAGTGGAGGCCAGCGAAGACCGGTGGCCTCAACGACAGAACGTTGTGTCTAGTGCTTGTGTATGTAAAAGATGGAGAGATATAACCAAAGAGATCGTAAGCTCTACTGCTAGCACAGGGAAAATCACTTTCCCTCCTTGTCTCAAACAGCCAGGACCTCGAGACTTACCTAATCAATGTCTCATTAAGCGGAACAAAAAGACGTCAATGTTCTACCTATATCTTGCTTATACACCATCATTTACAGATAAAGGAAAGTTTCTACTGGCGGCTAGAAGATTTAGACATGGGGCTCACACAGAATATATCATATCACTTGACGCTGATGACATATCACTAGGAAGTAATGCACACGTTGGGAGGTTAAGATCGGATTTTCTTGGCACCAACTTCGCAATATATGACAGCCAACCACCTCATAGTGGTGCAAAGCCATCCCACTGCAGGTCTAGCCGCCTGTTTGCCAGTAAGCAAGTGAGTCCTCAAGTTCCAGCGGGTAACTTTGAGGTGGGGCATGTATCTTACAAGTTTAATCTCTTAAAGTCAAGAGGTCCACGTAGGATGATTTGCTCCATGAAGTGCCCGACATCAGAGGATACATCTGACAGCAAATCGCACTGCAATCGTAAGATGAGCAAGGCAGAACTTGCCAGCTCCGGGTGTACAGTATTGAGGAACAAAGCTCCAAGGTGGCATGAGCATCTGCAATGCTGGTGCTTAAATTTTCACGGTCGTGTAACGGTTGCATCAGTGAAGAATTTTCAACTGGTTGCAACTGTTGATCCTAGCCAACCAGGTGGCAAAGGGGACGAGGAGACCGTTCTCCTCCAGTTTGGGAAAGTAGGGGATGATGTTTTCACAATGGATTATAGGCAGCCTCTGTCCGCCTTCCAGGCCTTTGCCATATGCCTTACAAGCTTTGGCACGAAACTCGCATGTGAATAA 1128 0.4663 MHKPTYVSNFRSWRSSSSFKETRSAEEDQGRNRLIPDLAEPDEYGTSWSSLLPELLGEILQRVEASEDRWPQRQNVVSSACVCKRWRDITKEIVSSTASTGKITFPPCLKQPGPRDLPNQCLIKRNKKTSMFYLYLAYTPSFTDKGKFLLAARRFRHGAHTEYIISLDADDISLGSNAHVGRLRSDFLGTNFAIYDSQPPHSGAKPSHCRSSRLFASKQVSPQVPAGNFEVGHVSYKFNLLKSRGPRRMICSMKCPTSEDTSDSKSHCNRKMSKAELASSGCTVLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDPSQPGGKGDEETVLLQFGKVGDDVFTMDYRQPLSAFQAFAICLTSFGTKLACE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01632 375 CDD F-box_AtTLP-like 48 92 - -
Pte15g01632 375 Gene3D Tubby Protein; Chain A 105 375 IPR025659 -
Pte15g01632 375 Pfam Tub family 109 370 IPR000007 -
Pte15g01632 375 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Pte15g01632 375 PRINTS Tubby superfamily signature 303 319 IPR000007 -
Pte15g01632 375 PRINTS Tubby superfamily signature 332 351 IPR000007 -
Pte15g01632 375 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Pte15g01632 375 PRINTS Tubby superfamily signature 353 375 IPR000007 -
Pte15g01632 375 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Pte15g01632 375 PRINTS Tubby superfamily signature 285 302 IPR000007 -
Pte15g01632 375 Gene3D - 42 95 - -
Pte15g01632 375 ProSitePatterns Tub family signature 1. 303 316 IPR018066 -
Pte15g01632 375 Pfam F-box domain 48 94 IPR001810 GO:0005515
Pte15g01632 375 ProSitePatterns Tub family signature 2. 360 375 IPR018066 -
Pte15g01632 375 SUPERFAMILY Tubby C-terminal domain-like 100 375 IPR025659 -
Pte15g01632 375 PANTHER TUBBY-RELATED 26 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01632 Pte-Chr15 14384304 14388975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01632 46 376 TUB Transcription Factor Family AT1G53320 75.811 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte15g01632 Tub 1.2e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01632 K19600 - qsa:O6P43_001049 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01632 15 14384304 14388975 Pte15g01632 15 14384304 14388975 RCT