Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01613 ATGAAGATTCAGTGTAACGTTTGTGAAGCAGCAGAGGCTACAGTTTTGTGTTGTGCCGATGAGGCTGCTCTGTGCTGTGATTGTGACCAGAAGATTCATGCATCTAATAAGTTTGCAAGTAAGCACCAGAGGGTTCCATTATATAGCTCTTCATCTCAGATGCCCAAGTGTGATATCTGTCAGGATGCAGTTGGCTATTTCTTTTGTCTCGAAGACCGTGCTTTACTATGCAGAAAATGTGATGTTGTTATGCACACTGCAAATGCATTTGTTTCAGCTCATAATAGATTTCTGCTAACTGGTGTACAAGTGGGTCTTGACGCCACACAGCCAGTTGCTGCAACTTCATCCGTTAAACCTCATTCTACAGATATCGTCGCAGAGTCAAAATCTTCTCCAGTATCTAGAAAGGCTGTATCAGTTCCACTGCCTCATGAACAAAGTGACTCATTACCTATCCATGTTGGTGGAGTTGAGGAGTTTAGACCAAGTAAGCTTTCATATACTGGCGGTTCTTTTGGTTCTGTAGATGGAGGCATTTCAATATGGCCTTCAGATGAATTTCTTGAGCTGAACGATTTCTCTCAGAGTTTTAATTACATGGACAATGAGTCATCCCAGGTAAAATTTTCTTTTTAA 639 0.4131 MKIQCNVCEAAEATVLCCADEAALCCDCDQKIHASNKFASKHQRVPLYSSSSQMPKCDICQDAVGYFFCLEDRALLCRKCDVVMHTANAFVSAHNRFLLTGVQVGLDATQPVAATSSVKPHSTDIVAESKSSPVSRKAVSVPLPHEQSDSLPIHVGGVEEFRPSKLSYTGGSFGSVDGGISIWPSDEFLELNDFSQSFNYMDNESSQVKFSF* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01613 212 SUPERFAMILY B-box zinc-binding domain 45 93 - -
Pte15g01613 212 CDD Bbox1_BBX-like 5 47 - -
Pte15g01613 212 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pte15g01613 212 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 193 - -
Pte15g01613 212 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Pte15g01613 212 Gene3D Classic Zinc Finger 1 93 - -
Pte15g01613 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pte15g01613 212 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pte15g01613 212 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pte15g01613 212 CDD Bbox1_BBX-like 56 99 - -
Pte15g01613 212 FunFam B-box zinc finger protein 22 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01613 Pte-Chr15 13953209 13958001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01613 1 206 C2C2-CO-like Transcription Factor Family AT1G78600 51.835 2.57e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte15g01613 zf-B_box 3.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01613 - - gmx:100790959 273.863