Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01551 ATGCAAATAAAGGATGTGCATCACTCCTCTGTCCCACTACTTCCTTCCGTTTCAATTTTGACAGAAATTACAGACATGGAGGCAGACCCCCAACTAGAACAGAACTTCCCTCTATTCTCTCGTAAACCCCCCCAAAAACCCTCCGTCATCGCCAAATCCACCGTTTCTGTAGATCCCGCCGGTATCTCTAACGCCGACGCCCCGCAACAGCAACTCGAGATATCAAAAGATACCAGCACCGCCGCCTCATTCGCGGACCTCGGCCTGGCCGAGTGGGCTGTGAACACCTGCAAAGAGCTCCGCATGCGAAAGCCGACGGGAGTGCAATCCCACTGTATTCCCAAAATCCTTGAAGGCTGCGACATATTGGGTATAGCCCAAACGGGTAGCGGAAAGACAGCAGCTTTTGCATTGCCCATACTTCACCGTTTATCAGAAAACCCGTTTGGGGTTTTCGCCTTGGTGGTGACTCCAACTAGAGAATTGGCTTTCCAGTTAGCTGAACAGTTTCGAGCACTTGGGTCATGCTTGTATTTAAGGTCTACTGTAATAGTTGGTGGTATGGATATGTTGAAACAAGCTAAGGAATTGATGACTAGACCCCATGTGGTTATTGCTACTCCTGGGAGAATCAAGGTTTTGCTTGAACAGGATCCTGACATTCCTGCTATATTTGCAAGGACTAAGTTTCTAGTCTTGGACGAGGCAGATAGAGTTTTAGATGTTGGGTTTCAGGAGGAACTGAGATGGGTCCTCAAGTGTCTGCCGAAAAAGCGGCAAACCCTTTTATTTTCTGCTACAATGACAAATGAGCTTCAAACATTGCGCGACCTTTCTCCAAATAAAGTTTATTATTATGAGGCATACGAAGGCTTTAAGACTGTGGAGACTCTTAAACAACAGTACATTTTTATCCCTAAAAATGTCAAGGAGGTTTATCTGATGCATATTTTGTCCAAGATGGAAGATATGGGCATTCGCTCTTGCATAATATTTGTAGCCAATTGCAGAACATGCCATCAATTAAGTTTAATGCTGGAAGAGCTTGATCTGGAAGTTGCAGCTTTGCATTCATTAAAATCCCAGTCTTTGAGACTTGCTGCACTTCTTGAATTCAAATCAAGACGTGTTCCTATACTGATTGCAACAGATGTTGCGAGTCGTGGTTTAGACATTCCGACTGTTGACATTGTCATTAATTATGACATCCCAAGATTCCCAAAAGATTATATTCACCGGGTGGGACGAACTGCAAGAGCAGGGAGAGGAGGTTTGGCTATGAGCATTATAACCCAGAATGATATTGAACTTGTTCATGAAATAGAAGCTGCTATGGGCAAGAAATTAGAAGAATTTGAATGCAAAGAGACTGAGGCACTTTCAGAGATCACAAAGGTTTATAAGGCGAGACGTGTGGCAGTAATGAAGATGATGGATGACGGCTTTGAGGATAAAGTGAAAGAACGGAAAAAGCAGAAATTGAAAACACTAGCAGAGAAAGGATTGTTGGACAAGAGGAGTAAAAGGAGAAAGAAAAGCAAATCCTAG 1548 0.4373 MQIKDVHHSSVPLLPSVSILTEITDMEADPQLEQNFPLFSRKPPQKPSVIAKSTVSVDPAGISNADAPQQQLEISKDTSTAASFADLGLAEWAVNTCKELRMRKPTGVQSHCIPKILEGCDILGIAQTGSGKTAAFALPILHRLSENPFGVFALVVTPTRELAFQLAEQFRALGSCLYLRSTVIVGGMDMLKQAKELMTRPHVVIATPGRIKVLLEQDPDIPAIFARTKFLVLDEADRVLDVGFQEELRWVLKCLPKKRQTLLFSATMTNELQTLRDLSPNKVYYYEAYEGFKTVETLKQQYIFIPKNVKEVYLMHILSKMEDMGIRSCIIFVANCRTCHQLSLMLEELDLEVAALHSLKSQSLRLAALLEFKSRRVPILIATDVASRGLDIPTVDIVINYDIPRFPKDYIHRVGRTARAGRGGLAMSIITQNDIELVHEIEAAMGKKLEEFECKETEALSEITKVYKARRVAVMKMMDDGFEDKVKERKKQKLKTLAEKGLLDKRSKRRKKSKS* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01551 515 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 286 IPR014001 -
Pte15g01551 515 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 52 512 - -
Pte15g01551 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 440 IPR027417 -
Pte15g01551 515 SMART ultradead3 101 301 IPR014001 -
Pte15g01551 515 SMART helicmild6 340 421 IPR001650 -
Pte15g01551 515 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 460 IPR001650 -
Pte15g01551 515 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 232 240 IPR000629 -
Pte15g01551 515 CDD SF2_C_DEAD 298 430 - -
Pte15g01551 515 CDD DEADc_DDX49 84 287 - -
Pte15g01551 515 Gene3D - 62 285 IPR027417 -
Pte15g01551 515 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Pte15g01551 515 Pfam DEAD/DEAH box helicase 107 274 IPR011545 GO:0003676|GO:0005524
Pte15g01551 515 Gene3D - 293 466 IPR027417 -
Pte15g01551 515 Pfam Helicase conserved C-terminal domain 326 421 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01551 Pte-Chr15 12871877 12876302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01551 104 452 Eukaryotic Initiation Factors Gene Family AT1G72730 34.857 5.32e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01551 K14778 - vvi:100267286 705.671