Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01549 ATGGATCAATCAGAACAGACACAAAAACATCATCATGTGGTTGGGGTTGTACCGAGCACTGGCCAGGCATATCCGAGTCCCTACCAACCCACTTCCATGGTGGCTTCTGGTGCTGTCACCTCTCCAACCCAACCACCAGCATCATTTTCCAACGTACCTCACCAAATTGCTTACCAGCAAGCTCAGCATTTTCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAACTACAGATGTTTTGGGCAAACCAGATGCAAGAAATTGAGCAAACAAATGACTTCAAGAACCATAGTCTCCCCCTTGCTCGGATCAAGAAAATAATGAAAGCTGATGAGGACGTCCGGATGATTTCTGCAGAGGCACCAGTCATATTTGCAAAAGCATGTGAAATGTTCATCTTGGAGCTTACCTTGCGTTCGTGGATTCACACGGAAGAAAACAAGAGGAGAACTCTGCAAAAGAATGATATTGCAGCTGCTATTTCTAGGACAGATGTATTTGATTTCTTGGTCGATATAATTCCAAGAGATGAACTGAAAGAAGAGGGATTGGGAGTAACCAAGGCCACTATTCCTGTTGTTGGTTCTCCAGCAGATATGCCATATTACTATGTCCCACAGCAGCCTCCCCCAGGAATGATCATGGGGAAGCCAATTGACCAAGCTGCACCTTATGGTGCCCAACAACCTCGCCCACCCATGGCATTTATGCCATGGCCACAAACACAATCTCAGCAGCAACAAACGGATAGGAATACTGGATAA 762 0.4646 MDQSEQTQKHHHVVGVVPSTGQAYPSPYQPTSMVASGAVTSPTQPPASFSNVPHQIAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKATIPVVGSPADMPYYYVPQQPPPGMIMGKPIDQAAPYGAQQPRPPMAFMPWPQTQSQQQQTDRNTG* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01549 253 FunFam Nuclear transcription factor Y subunit gamma 63 175 - -
Pte15g01549 253 SUPERFAMILY Histone-fold 51 169 IPR009072 GO:0046982
Pte15g01549 253 MobiDBLite consensus disorder prediction 237 253 - -
Pte15g01549 253 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 59 236 - -
Pte15g01549 253 Pfam Core histone H2A/H2B/H3/H4 48 160 IPR007125 GO:0003677
Pte15g01549 253 Gene3D Histone, subunit A 58 175 IPR009072 GO:0046982
Pte15g01549 253 MobiDBLite consensus disorder prediction 217 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01549 Pte-Chr15 12858603 12859364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01549 76 220 CCAAT-HAP5 Transcription Factor Family AT1G56170 86.301 1.06e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pte15g01549 CBFD_NFYB_HMF 2.1e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01549 K08066 - rcu:8260315 340.502