Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01522 ATGGAGAGAATGTTCTCTCCTAAGAAGCCTTCAACTATGAATTCTCATGATAGACCCATGTGTGTTCAAGGTGATTCAGGCCTTGTCCTCACCACAGACCCAAAGCCTAGACTTCGCTGGACTGTGGAGCTTCATGAACGCTTTGTTGATGCTGTCACTCAGCTTGGAGGGCCAGATAAGGCCACTCCTAAAACTATCATGAGAGTTATGGGTGTGAAGGGTCTAACACTTTACCACCTCAAGAGCCACCTCCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGATCACTCAATTAAGGATGGTATGAGAGCTTTAGAACTGCAGCGAAACACTGCTTCTTCTTCGTGTATGATCAGCCGCAATATGAATGAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAGCTAGAGGTGCAGAAACATCTTCAATTGAGGATCGAGGCTCAAGGGAAATACATGCAGAGTATATTGGAGAAAGCTTGTCAAACCCTCGCCGGAGAAAACATGACATCTGGTAGTTTCAAAGGTATTGGAACTCAAGGGATCCCTGACATGGGCACCTTGAAAGACTACAATACCCCACATGCTCTCAACTTCCCTTCCTTTCAAGACCTCAATATATATGGGGGTGGTGATCAACTCGATCTTCATCAAAACATGGACAGATCACTTGAAGGGTTTATGCAAAATAATGAAGGTATTTGTATTGGGAAGAAGAGGCCTAGTTCTTACAATGGAAATGGGAAGAGTCCATTGATCTGGAATGATGACTTTAGGATTCAAGACTTGGGAACAAACTCATCATGCCTAGGTTCTCAGGATGATTTATTCAAAGGTGATCACGTTCAAATTGCACCACCAAGTTTGGACCGAGGCACTGACATGGACTCCATGGGTGAGATTTATGAAACAAAAGCAGTAGCTATTCAGGGTGATAGTGTCGGTGAAAGAAAATTTGATGGATCATTGAAGCTTGAGAGGCCATCACCGCGAAGACCGCTCAATCAAGCTGAGAGAATGAATCCCATGATTAACACTGGCACTTTGCAACAAGCTGGTAGAGCATCAACGACATTTGCATGA 1098 0.4408 MERMFSPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRALELQRNTASSSCMISRNMNEMQMEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKACQTLAGENMTSGSFKGIGTQGIPDMGTLKDYNTPHALNFPSFQDLNIYGGGDQLDLHQNMDRSLEGFMQNNEGICIGKKRPSSYNGNGKSPLIWNDDFRIQDLGTNSSCLGSQDDLFKGDHVQIAPPSLDRGTDMDSMGEIYETKAVAIQGDSVGERKFDGSLKLERPSPRRPLNQAERMNPMINTGTLQQAGRASTTFA* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01522 365 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Pte15g01522 365 MobiDBLite consensus disorder prediction 1 20 - -
Pte15g01522 365 MobiDBLite consensus disorder prediction 323 365 - -
Pte15g01522 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Pte15g01522 365 MobiDBLite consensus disorder prediction 323 338 - -
Pte15g01522 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 246 IPR044848 GO:0003700
Pte15g01522 365 FunFam Myb family transcription factor 34 92 - -
Pte15g01522 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Pte15g01522 365 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Pte15g01522 365 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Pte15g01522 365 Gene3D - 34 92 - -
Pte15g01522 365 MobiDBLite consensus disorder prediction 344 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01522 Pte-Chr15 12534944 12537406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01522 4 361 G2-like Transcription Factor Family AT1G79430 58.684 7.24e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte15g01522 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01522 - - vvi:100256921 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01522 15 12534944 12537406 Pte15g01522 15 12534944 12537406 RCT