Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01462 ATGGATAAAGGAGTGCCCCCTAGCCTTTTTGTAAACGACGGTTCGTTCATGGAGAGGTTCAAACAACTTCAACAAGAGCAGGAGAAGGAGAAAGGGAAGACTACAAAAGCAGGGAATTCTAAACCAATTAAAATTGTTCCTGGAAGCTTGACTCCAAATCCTTCCTTGAGTAAGACAAATAATACACAGAAAACACCCCAGATTGCTTCAGGTGGCAAACTTGCTTTCAGCTTGAAACAGAAGTCAAAATTGGTGCCACCCCCTGTGAAACTTGCCAGTGATGAGGATGATGAAGAAGAAGCTGTCAGTGCTGCAGATGACACAAGGGATACACCATCTAAACGGCAGAAGTTAAGCCAAGCAGATGGCTCAGAACAATTATCAGGAGCTGTTGATGTTGCACCAACTTCCCCAAGTGATCCTACAGTAAAGAGAGTTGCTGACAAACTTGCAAGTTTTGTGGCTAAAAATGGAAGACAATTTGAGGACGTTACTCGGCAAAAAAATCCTGGGGATACTCCTTTTAAATTTTTATTTGATCAAAACTGCGCTGAGTACAAGTATTATGAATATCGGTTGGCTCAAGAGGAGAAGGATCTCGCACAGGCTAGGGAAGTCCAAACATCTTGTACTGGGAGTATGAGCTCATCATCTTCTAGATTGACAAGCATTACCAGGAGGTCTGCTGATCCTTATTCAAGTTACCAAGTCCCTGCATCTGCTTTATATGAAGGTGCAGAACTTTCTGGAGCTGATGGAAGCTCAGTACACTCACAATATGACAGAGCATATTCTGGCACCCAATCAAGCAATGATTCCTTGGCTATGATGGAGTTCTACATGAAGAAGGCTGCACAGGAAGAGAGGCGGAGACAGCCGAAGCAGTCAAAAGATGAGATGCCACCCCCTCCTTCTCTTCAAGGGAAAAAAGGTCATCATATGGGTGATTATATTCCCCCGGAAGAGCTCGACAAGTTTTTGGCTTCCTGTAATGATGTGGCTGCGCAGAAGGCTGCTAAGGAGGCTGCAGAGAGGGCTAGAATCCAGGCTGACAATGTTGGGCACAGACTCTTGTCTAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTAGCTCCAACAAGGGCATTTCAGATCCAATCATGGCAGGTGGTGTGAAAGCAAACAATTTGGGCGTTGGCGCTCACAATCCTGGGGAGGTGACTTCTGATGATGACATATATGAGCAATACAAAAAACGGATGATGCTTGGCTATCGGTACAGGCCGAACCCCTTGAACAATCCGCGTAAAGCTTACTACTAA 1302 0.4516 MDKGVPPSLFVNDGSFMERFKQLQQEQEKEKGKTTKAGNSKPIKIVPGSLTPNPSLSKTNNTQKTPQIASGGKLAFSLKQKSKLVPPPVKLASDEDDEEEAVSAADDTRDTPSKRQKLSQADGSEQLSGAVDVAPTSPSDPTVKRVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDQNCAEYKYYEYRLAQEEKDLAQAREVQTSCTGSMSSSSSRLTSITRRSADPYSSYQVPASALYEGAELSGADGSSVHSQYDRAYSGTQSSNDSLAMMEFYMKKAAQEERRRQPKQSKDEMPPPPSLQGKKGHHMGDYIPPEELDKFLASCNDVAAQKAAKEAAERARIQADNVGHRLLSKMGWKEGEGLGSSNKGISDPIMAGGVKANNLGVGAHNPGEVTSDDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01462 433 ProSiteProfiles SURP motif repeat profile. 146 189 IPR000061 GO:0003723|GO:0006396
Pte15g01462 433 MobiDBLite consensus disorder prediction 1 143 - -
Pte15g01462 433 MobiDBLite consensus disorder prediction 117 135 - -
Pte15g01462 433 MobiDBLite consensus disorder prediction 285 318 - -
Pte15g01462 433 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 65 IPR040169 -
Pte15g01462 433 Pfam Surp module 145 195 IPR000061 GO:0003723|GO:0006396
Pte15g01462 433 Pfam G-patch domain 351 394 IPR000467 GO:0003676
Pte15g01462 433 MobiDBLite consensus disorder prediction 249 268 - -
Pte15g01462 433 SUPERFAMILY Surp module (SWAP domain) 129 196 IPR035967 GO:0003723|GO:0006396
Pte15g01462 433 Gene3D Surp module 93 201 IPR035967 GO:0003723|GO:0006396
Pte15g01462 433 MobiDBLite consensus disorder prediction 252 268 - -
Pte15g01462 433 MobiDBLite consensus disorder prediction 22 37 - -
Pte15g01462 433 ProSiteProfiles G-patch domain profile. 350 397 IPR000467 GO:0003676
Pte15g01462 433 SMART G-patch_5 348 395 IPR000467 GO:0003676
Pte15g01462 433 MobiDBLite consensus disorder prediction 208 230 - -
Pte15g01462 433 SMART surpneu2 144 198 IPR000061 GO:0003723|GO:0006396
Pte15g01462 433 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01462 Pte-Chr15 11666889 11671366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01462 346 406 C2H2 Transcription Factor Family AT5G26610 41.935 1.52e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01462 K13096 - qsa:O6P43_001332 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01462 15 11666889 11671366 Pte15g01462 15 11666889 11671366 RCT