Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01453 ATGTCGAAAAGCTGCAGGGTTCCGTGCAAGTTCTTTGCCAATGGTGGGTGTCTGAAGGGGGAGCAATGTCAATATTATCACGAACGGAAGGATGAGATGAATCATACTCAGATATGCTCATACTATCAGAAAGGATTCTGCTCCCATGGTAGTCGGTGCAAATATAAGCACGTCAAATCTTATTCTCAAGTGCAAGAATGGGCACCTTCTTCATCTAGAAATGGACGGAAGCCTCTGGTATCAGATTCTTTTCCAGCCAATAATGCTCATGGAAAATCTAAGTGGGTTGCCAAGTCTAAAGAATCTGTATCTTCCATCAAACCAGCTGTTAAGTTAGGATGTCAATTTGTGAAGACTGGTGAAGTTGAGAATGTTAGCAACGTTGAACCAGCTGATAGGCCTCTTTGTTTGTCTTCTGTTGATGGTAAATGTATCCTTGGAGAAAAGTGCCCCAACGTACATGGTCAGCAATGTGCCACATGTGGAAAATATTGTTTGCATCCTTTCCGACCTGAGGAAAATGAAGAGCATAAAAAAGCATGCGAGGAAAAGAAGAAGCACCTTGAAATATTGAAGAAGAGTGAAGAAATTGAATGCAATGTTTGCCTAGAACGTGTGCTTTCAAAGCCTACAGCTTCTTTGCGTAAGTTTGGGATCTTACCTGAGTGTGACCACCCTTTCTGTATATCCTGTATTAGGAATTGGCGCAATAGCTCTCCAACTTCTGGGATTGATGTCAACAGTGCAGTGAGGGCTTGTCCAGTTTGTCGTAAGCTATCATACTTTGTTATTCCAAGTGCCATTTGGTACACCACAGAAGAAGAAAAACAAAACATCATTGACAGTTATAAGGCAAAGCTTAAGTTGATTGATTGCAAGCATTTCAATTTTGGAGATGGAAATTGCCCATTTGGGACTCGCTGTTTCTACAAGCACAAAGTCATGCCCGGCACGTATACTTGGACACATCAGCATCCACCTCCTCGAAGGCGCCCTCTACGCAGTTCCAATGGTTTTGGCATGCATGACGTGCTAGATATGCTCAGGGAAGTTGATTTAGAACCTGAAGACATGTATTCAGTGATGCGAGAGACGGAATTTTTCAGTGAAATGAGTCCATTGGAAATGATGTTCATGTCAACAATGCTAAGTCGTGGCCCTGAAGCCTTTGACAATCTTGAAGAGCTCTCTGAAGAGGAATCCGATGAACTAGATCCTTTCGGTGTAGCATATCTATCTGCAATGATGCTTGCTTCGGACATGGATGACTCTTTAGGCGACGATGAGCTTTTCTAG 1296 0.4275 MSKSCRVPCKFFANGGCLKGEQCQYYHERKDEMNHTQICSYYQKGFCSHGSRCKYKHVKSYSQVQEWAPSSSRNGRKPLVSDSFPANNAHGKSKWVAKSKESVSSIKPAVKLGCQFVKTGEVENVSNVEPADRPLCLSSVDGKCILGEKCPNVHGQQCATCGKYCLHPFRPEENEEHKKACEEKKKHLEILKKSEEIECNVCLERVLSKPTASLRKFGILPECDHPFCISCIRNWRNSSPTSGIDVNSAVRACPVCRKLSYFVIPSAIWYTTEEEKQNIIDSYKAKLKLIDCKHFNFGDGNCPFGTRCFYKHKVMPGTYTWTHQHPPPRRRPLRSSNGFGMHDVLDMLREVDLEPEDMYSVMRETEFFSEMSPLEMMFMSTMLSRGPEAFDNLEELSEEESDELDPFGVAYLSAMMLASDMDDSLGDDELF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01453 431 Gene3D - 1 73 - -
Pte15g01453 431 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Pte15g01453 431 SUPERFAMILY CCCH zinc finger 6 28 IPR036855 GO:0046872
Pte15g01453 431 ProSiteProfiles Zinc finger C3H1-type profile. 33 60 IPR000571 GO:0046872
Pte15g01453 431 Pfam Zinc finger, C3HC4 type (RING finger) 199 256 IPR018957 GO:0046872
Pte15g01453 431 MobiDBLite consensus disorder prediction 69 92 - -
Pte15g01453 431 SUPERFAMILY RING/U-box 192 263 - -
Pte15g01453 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 290 IPR013083 -
Pte15g01453 431 Coils Coil 174 198 - -
Pte15g01453 431 SUPERFAMILY CCCH zinc finger 35 57 IPR036855 GO:0046872
Pte15g01453 431 PANTHER MAKORIN-RELATED 7 331 IPR045072 GO:0000209|GO:0061630
Pte15g01453 431 CDD RING-HC_MKRN 197 257 - -
Pte15g01453 431 SMART ring_2 199 256 IPR001841 -
Pte15g01453 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 58 IPR000571 GO:0046872
Pte15g01453 431 ProSiteProfiles Zinc finger C3H1-type profile. 286 315 IPR000571 GO:0046872
Pte15g01453 431 Pfam RNA-binding, Nab2-type zinc finger 8 27 - -
Pte15g01453 431 Pfam RNA-binding, Nab2-type zinc finger 291 312 - -
Pte15g01453 431 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Pte15g01453 431 SMART c3hfinal6 33 59 IPR000571 GO:0046872
Pte15g01453 431 SMART c3hfinal6 131 156 IPR000571 GO:0046872
Pte15g01453 431 SMART c3hfinal6 4 29 IPR000571 GO:0046872
Pte15g01453 431 SMART c3hfinal6 286 314 IPR000571 GO:0046872
Pte15g01453 431 ProSiteProfiles Zinc finger RING-type profile. 199 257 IPR001841 -
Pte15g01453 431 ProSiteProfiles Zinc finger C3H1-type profile. 3 30 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01453 Pte-Chr15 11609964 11613920 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte15g01453 zf-C3HC4 3.3e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01453 K15687 - qsa:O6P43_001348 439.499