Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01449 ATGGCAGACCCTCAGTCGTCTGGTGTCTTCACTGGATGGTTCAACTTCATGCCTCTCCATCCTCATTTCTCTTCTTTTTCTACTCAGTCCAACTTGTCTTCTTCATACCCTCATGCTGTCCCAAATAACAAATTCTCTATGCACTTTCAGACTAATAGTACTTATAATCGTACTCCAGCTCCTTCTTCGCAGGTATCCCTCACAGCTCTTCCTTTGATAAACACCTTAAACCCTACATGCCAGCAGCAAGAGGAACATGATGAGCAGTCAAATGGCGTGGAAGACGAAGAGGACAAAAAGATGAGAAAAGATGATTTTGATGATGAGGACGGTGGTGGTGGAACTGTGACTGTAGCCCTACGCATAGGCCTTCCTAGTGTAAATAACACCGAATCAGGTGAAAGACATCAGATCTCTAAGTCTCTAGTAGTGCCGACTGATAAGGAGGAAGTGACTGTGATTCAAGGATATCCTGTGCTGGATACATCAAACAAGGGCCAGTATTGGATTCCAACCCCTTCTCAGATTCTAATCGGTCCCACTCAGTTCTCATGTCCTGTGTGCGGCAAGACGTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGCCATGGATCTCAATACAGAAAAGGGCCAGATTCTTTGAGAGGAACTCAACCAACGGCAATGCTAAGGCTTCCATGCTTTTGCTGTGCACCAGGGTGCAAGCACAACATAGATCACCCAAGAGCAAAGCCCCTCAAAGATTTCAGGACTCTCCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCACGTGTAGGAAATGTAGCAAACCATTTGCTGTGAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGGAAATTATGGTACTGCATATGTGGTTCAGATTTTAAACACAAAAGGTCTTTGAAAGATCACATGAAAGCTTTTGGCCTTGGCCATGGCGCTTTAGACAGTGACTGCTTCCCTGAAGATGATGCAACCTCAGAAGTTGAACATGACGATGAGACTTCAGTTTGA 1032 0.4486 MADPQSSGVFTGWFNFMPLHPHFSSFSTQSNLSSSYPHAVPNNKFSMHFQTNSTYNRTPAPSSQVSLTALPLINTLNPTCQQQEEHDEQSNGVEDEEDKKMRKDDFDDEDGGGGTVTVALRIGLPSVNNTESGERHQISKSLVVPTDKEEVTVIQGYPVLDTSNKGQYWIPTPSQILIGPTQFSCPVCGKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPFTCRKCSKPFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHMKAFGLGHGALDSDCFPEDDATSEVEHDDETSV* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01449 343 SUPERFAMILY beta-beta-alpha zinc fingers 249 287 IPR036236 -
Pte15g01449 343 MobiDBLite consensus disorder prediction 79 114 - -
Pte15g01449 343 Gene3D Classic Zinc Finger 246 315 - -
Pte15g01449 343 SMART c2h2final6 267 287 IPR013087 -
Pte15g01449 343 SMART c2h2final6 183 205 IPR013087 -
Pte15g01449 343 FunFam Zinc finger protein WIP2 236 318 - -
Pte15g01449 343 SUPERFAMILY beta-beta-alpha zinc fingers 176 205 IPR036236 -
Pte15g01449 343 FunFam zinc finger protein WIP2-like 182 205 - -
Pte15g01449 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Pte15g01449 343 PANTHER ZINC FINGER PROTEIN WIP2 30 338 IPR043584 GO:0003700|GO:0010468
Pte15g01449 343 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Pte15g01449 343 MobiDBLite consensus disorder prediction 93 110 - -
Pte15g01449 343 Gene3D Classic Zinc Finger 182 205 - -
Pte15g01449 343 Pfam Zinc finger, C2H2 type 183 202 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01449 Pte-Chr15 11581923 11584425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01449 116 339 C2H2 Transcription Factor Family AT3G57670 67.194 7.29e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g01449 zf-C2H2_6 9.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01449 - - qsa:O6P43_001350 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01449 15 11581923 11584425 Pte15g01449 15 11581923 11584425 RCT
Pte15g01449 15 11581923 11584425 Pte15g01228 15 9421403 9423973 RCT