Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01442 ATGAGTAGTGGTTCAGAGAAGTACAAACCAACACCATCTCCATCTGATTTAGATGGCACTACCAATGCCAAAGATATGAGTAACAGAAGTGTTAATACAGACAATTCTTTTTCCATTGTGCTTGAACATGCATCTAACAATGACATTGAAGCTTTTAAGCAAGTGTTAGATAGGAATCCTGCTGCAATCAATGAGGCAAGCCTATGGTACAGCTGCCAAACTGGTTCAAAAAAGATGGTTCTTCAAAAGAGAACCCCATTAATGATTGCTGCAACTTATGGTAGTTTTGATGTTCTGAAGTTTATACTTTCTTATCCTGGGGTCGATGTGAATTTCCCCTGTGGCTATGACAATACGACTGCCCTCCATTGTGCTGCTTCTAGTGGAACTGTGAATGCAATTGATGTTACACAGCTACTTTTGTCTGCGGGTGCTGACCCCAATTGCTTGGATCTTAAAGGAATGCGTGCAGTGGATATTATTGTTGCTCCTCCAAAACTTGGCAGCGTGAGAAAAACTCTTGAAGAACTCCTCTCTGCAGAAGGTTCAAACTTCAATTCCCCAGTGTACTCTTCCTCACCAGAAACTTTGATGTCGACACCTCTTTCAGAGAAATTGCCTCCATCTGACACACTCAAGCTTACTGATGTACTTGCTAGCCCTCATTCAGAGAAGAAAGAATATCCTGTTGATCCATCTCTACCTGACATTAAGAACAGCATTTATGCAACTGATGAGTTCCGCATGTTCTTGTTCAAGGTCAGACCTTGTTCTCGGGCATATTCCCATGATTGGACTGAGTGTCCATTTGTTCATCCAGGAGAAAATGCTCGTAGAAGGGACCCTCGCAAATACCATTACCGCTGTGTTCCTTGTCCTGATTTCAAAAAGGGGTCTTGCCACCGTGGGGATATGTGTGAATATGCACATGGGATATTTGAGTGTTGGCTGCACCCAGCTCAATATCGAACTCGTCTATGTAAGGACGGTACAAGTTGCAACAGACAAGTGTGCTTTTTTGCTCACACTCCTGAAGAGCTTCGTCCACTATATGTTTCCACTGGTTCTGCTGTTGCTTCCCCACGCTCATCTGTTTCTGGTCCCAGTGTCACGGACATGGCTGCTGCAATGAGTCTCATTCCAGGTTCTCCTACTTCTGCGGCATCCCTGTCTCCTTTTGGTCAGCTTTTGTCTCCATCTACAAATGGCATTTCACGCTCATCTGGTGTCTGGAGTCAGCCAAATGTGCCAACCCTTCATCTCCCAGGAAGCAACCTTCAATCTAGTCGCTTGAGATCTTCTTTAAGTGCACGCGACATTCCTCCTGATGCGCTGCAGATGTTAGTCGATTTTGACGGGCAGCAACAGCTTTTGAATGATATGAACTGTTTCTCAAGTTCACACCCTGATGGTGTTTCAATTACTCGATCTGGTCGATTGAAGACACTAACTAATTCAAATCTTGAAGAACTATTTTCTGCTGAGATATCTTCACCACGGTATTCTGATTTGAATGCAGCTCCAGTCTTCTCCCCTACACATAAATCAGCAGTTCTCAACCAATTCCAGCAGCTGCAGAATGTGTTGTCACCCATCAATACAAATGTACACTCACCTAAGAATCTTGATCACCATATGTTTGGGGGTATCTCTTCCCCTGGAAGGATGTCTCCAAGAAGCGTGGAACCAATATCTCCCATGGGATTACGCCTATCTGCATTTGCCCAGCGTGAGAAATTGCAGCAGCAGCAGCTGTGCAGCCTGAGCTCTAGGGATACGGGGGCAAATACACCTACCTCAGTTGTTAGATCCCCTGTTAGCACATGGTTGAAATGGGGTTCTCCGAATGGGAAAGTGGATTGGTCAGTTAATGGAGATGAACTTTATCGAATGCGCAAATCATATTCCTTTGATCTACAAAATAGTAGCGAAGATCGCAATCTTCCCTGTGTGCAATCTCTTGTGAAGGAGTCCCCAACTGAAACGATGAACCAGAAGTTGACTGTATCAATCCCTGGTGCTACTGCATCCACAGTTGGTCTGAATTCTAATGCTCACGGTGAACCTGTTGATAGTTCTGTTATAGGAGCTTGGATTGAGCAAATGCAGCAGGATCAGGTTCGTGTCTAG 2130 0.4455 MSSGSEKYKPTPSPSDLDGTTNAKDMSNRSVNTDNSFSIVLEHASNNDIEAFKQVLDRNPAAINEASLWYSCQTGSKKMVLQKRTPLMIAATYGSFDVLKFILSYPGVDVNFPCGYDNTTALHCAASSGTVNAIDVTQLLLSAGADPNCLDLKGMRAVDIIVAPPKLGSVRKTLEELLSAEGSNFNSPVYSSSPETLMSTPLSEKLPPSDTLKLTDVLASPHSEKKEYPVDPSLPDIKNSIYATDEFRMFLFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYRCVPCPDFKKGSCHRGDMCEYAHGIFECWLHPAQYRTRLCKDGTSCNRQVCFFAHTPEELRPLYVSTGSAVASPRSSVSGPSVTDMAAAMSLIPGSPTSAASLSPFGQLLSPSTNGISRSSGVWSQPNVPTLHLPGSNLQSSRLRSSLSARDIPPDALQMLVDFDGQQQLLNDMNCFSSSHPDGVSITRSGRLKTLTNSNLEELFSAEISSPRYSDLNAAPVFSPTHKSAVLNQFQQLQNVLSPINTNVHSPKNLDHHMFGGISSPGRMSPRSVEPISPMGLRLSAFAQREKLQQQQLCSLSSRDTGANTPTSVVRSPVSTWLKWGSPNGKVDWSVNGDELYRMRKSYSFDLQNSSEDRNLPCVQSLVKESPTETMNQKLTVSIPGATASTVGLNSNAHGEPVDSSVIGAWIEQMQQDQVRV* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01442 709 PANTHER UNKEMPT FAMILY MEMBER 42 658 IPR045234 -
Pte15g01442 709 FunFam Zinc finger CCCH domain-containing protein 66 244 312 - -
Pte15g01442 709 ProSiteProfiles Zinc finger C3H1-type profile. 291 313 IPR000571 GO:0046872
Pte15g01442 709 Gene3D - 34 184 IPR036770 -
Pte15g01442 709 SMART c3hfinal6 321 344 IPR000571 GO:0046872
Pte15g01442 709 SMART c3hfinal6 286 312 IPR000571 GO:0046872
Pte15g01442 709 ProSiteProfiles Ankyrin repeat region circular profile. 117 151 - -
Pte15g01442 709 Pfam Ankyrin repeats (3 copies) 44 149 IPR002110 GO:0005515
Pte15g01442 709 Gene3D - 287 349 - -
Pte15g01442 709 ProSiteProfiles Ankyrin repeat profile. 117 152 IPR002110 GO:0005515
Pte15g01442 709 SMART ANK_2a 35 65 IPR002110 GO:0005515
Pte15g01442 709 SMART ANK_2a 117 149 IPR002110 GO:0005515
Pte15g01442 709 SMART ANK_2a 82 112 IPR002110 GO:0005515
Pte15g01442 709 MobiDBLite consensus disorder prediction 1 30 - -
Pte15g01442 709 SUPERFAMILY Ankyrin repeat 35 162 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01442 Pte-Chr15 11518785 11522882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01442 15 706 C2H2 Transcription Factor Family AT5G12850 50.140 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte15g01442 Ank_2 3.9e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01442 - - qsu:112038752 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01442 15 11518785 11522882 Pte15g01442 15 11518785 11522882 RCT