Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01417 ATGTGCATGCCTCTACGGTCCCAACTTTCTTCTATTCACCAATTAGCAATGCAGAGCTCCCATGATGCCTTAGAATTTCCCGAGCTTCCCATTGAATCTTGTTATGACCACCTAACTGCATATAAGAGTGAATTCCATCAGTTTGATTCCTATCTTCCACTCTATCAGCTTGATGACCAATTTCGAAACATCCTACTCCAAGAACCACCCTTTGCATCGACATCTACAAATGCGTTTCCAGTTAATATGATCGGTCTTTCTGTAACTCATGAAGTACCAAAAGAAAGCAGCGATGTGAGGAACAAGAACAACGTACAGAACCTTACTGGGTCGTTCTTCGAAAAAAGTCATCATCAGTATGATGATCATCAATGGTTCTTTTTCAGCCGAAGAGATCGGAAGTACAAGAACGGACAAAGGCCAAACCGATCTGCAAAAGATGGTTATTGGAGGGCAAACGCAGCAGACATCTGCATTCTAGACAACGATGTCATGGTTGGGAAAAGGAAGACACTGGTTTTCTTCGAAGGAAAACAGCCAAAGGGTACAAAGACTAACTGGATCCTTCATGAGTACCGCCTAATTAAAGAAGTCGAGAAGGTATGTCTTGCATGTCTTCTTTTCCAAAGCAGCGATGTGAGGAACCAGAACAACGTTCAGAACCTTACCAAATCTTTCTTCGAAAGTTTCCCTTCTGGCTATCGCTTTCTTCCAACAGACGTTGAGCTGATCTGCGGCTATCTGCAGCCGAAGGTTGAAGGAAGACCTATGCCTCCTAACCTCATTGATGAAGTGGAACTGTACAAAGATCATCCTGTCAGTCTTGCAGCGAGTCATCGTCAGTATAATGATCATCAATGGTTCTTTTTCACCCGAAGAGATCGGAGGTACAAGAACGGACAAAGGCCAAACCGATCTGCAAAAGATGGTTATTGGAAGGCAACCGCAGCAGACATCTGCATCCTACACAATGATGTCATGGTTGGGAAAAGGAAGACACTGGTTTTCTACGAAGGAAAACAGCCAAAGGGTAAAAAGACTAACTGGATCCTCCATGAGTACCGCCTAATTAAAGAAGTCGACGAGTTCGCTGATTATGTCTTGTGTACGATGTATGAGAGGAAAGAAGCATCCAAGAATACCCGGTGA 1149 0.4369 MCMPLRSQLSSIHQLAMQSSHDALEFPELPIESCYDHLTAYKSEFHQFDSYLPLYQLDDQFRNILLQEPPFASTSTNAFPVNMIGLSVTHEVPKESSDVRNKNNVQNLTGSFFEKSHHQYDDHQWFFFSRRDRKYKNGQRPNRSAKDGYWRANAADICILDNDVMVGKRKTLVFFEGKQPKGTKTNWILHEYRLIKEVEKVCLACLLFQSSDVRNQNNVQNLTKSFFESFPSGYRFLPTDVELICGYLQPKVEGRPMPPNLIDEVELYKDHPVSLAASHRQYNDHQWFFFTRRDRRYKNGQRPNRSAKDGYWKATAADICILHNDVMVGKRKTLVFYEGKQPKGKKTNWILHEYRLIKEVDEFADYVLCTMYERKEASKNTR* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01417 382 SUPERFAMILY NAC domain 228 373 IPR036093 GO:0003677|GO:0006355
Pte15g01417 382 Pfam No apical meristem (NAM) protein 231 356 IPR003441 GO:0003677|GO:0006355
Pte15g01417 382 Pfam No apical meristem (NAM) protein 116 194 IPR003441 GO:0003677|GO:0006355
Pte15g01417 382 PANTHER NAC TRANSCRIPTION FACTOR 56 230 379 - -
Pte15g01417 382 SUPERFAMILY NAC domain 118 198 IPR036093 GO:0003677|GO:0006355
Pte15g01417 382 ProSiteProfiles NAC domain profile. 67 210 IPR003441 GO:0003677|GO:0006355
Pte15g01417 382 ProSiteProfiles NAC domain profile. 230 374 IPR003441 GO:0003677|GO:0006355
Pte15g01417 382 Gene3D NAC domain 82 222 IPR036093 GO:0003677|GO:0006355
Pte15g01417 382 Gene3D NAC domain 239 379 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01417 Pte-Chr15 11077797 11094333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01417 222 378 NAC Transcription Factor Family AT3G04070 43.678 6.09e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte15g01417 NAM 5.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01417 - - qlo:115978339 243.047