Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01391 ATGAATAAGATTCTCATGGCAACAGCACTTTCAAGAATGGAGCTAACTGATCAATGCAGAGCTTCCCTTGGCAAAAATGGAGCAATTGAATGTCTTGTGAACATGTTCAATTCAGGGAAGCTTGAAGCTAAGTTGTCAGCCCTAAATGCACTTCAAAATTTATCCAGCTTGACCGAGAATGTCAAGCGAATGGCAAGATCAGGCATAATTGTATCTTTGCTTCAGCTTCTTTTTTCAGTAACATCTGTACTCATGACTATTAGGGAGCCTGCATCGGTGATTCTTGCAAGGATTGCTAAATCAGAAGCTGTTCTTGTAAATCCAGAAGTCACACAGCAAATGCTGTCCCTCCTAAATCTATCTAGCGCTACTGTTCAGTGTCATCTTCTTGAAGCACTCAACAGCATTGCATCCCATCCTAGTGCATCGAAGGTCAGAAACATAATGAATGAAAAAGGTGCACTTCAACTTATTTTACCCTTTTTGATGGAAAGTAATACCAAAGTCAGAGCTAATGCTTTGAATCTATTGTACACTCTCTCCAACCATATACCACAAGAGTTGACAGAACATCTAGGAGTGTCTCATCTCCATAACATTGTCCATATCATCTCATCTTCATCATGGGATACCGAAAAAGTTGCTGCAATCGGTATACTAAGTAACTTACCTGTTAGCAATAGACATGTGACAGATATACTCCATAGGGAAAATTTGCTACCAGCTTTGATCGCAGTAGTGAATTCAAGCACAGAAGATAAAACCACGGCCATCTTGCTGGAAGAGAATGTCGCTGGTGTTTTGATCAGGTTTACAGTTTCATCTGACAAGAAATCACAACTCCTTTCAGCAGAACATCGGGTGATACCTTTGCTAGTAAATTTTCTCTCCAGTGGATCATCCGTTGCAAAATGTAGAGCTGCAGCCTCACTGACTCAGCTCTCACAGAACACACTTTCCCTGAGGAAGCCTAGAAAATCAATGTGGCCATGTGTGCCTCCCTCTGCAGGTGGTGCATATTGTGAAGTTCATGATGGGTATTGCTTCGTCAACCGTTCATTCTGTATAGTCAAGGCAGGAGCCATTTCTCCGTTGATACAAATATTGGAAGGTCAAGATAGGGAAGCAGATGAAGCTGCTCTTAGTGTCCTTGCAACGCTGATGCAAGATGAAATTTGGGAAAATGGTGCGAATTTCTTAGCCAAAATGTCATGTGTTCAAGCAATTATAAAGGTGTTAGAAGTGGGGAATGTCAAGGCTCAAGAGAAAGCACTGTGGATATTAGAGAGGGTATTCAGAGTTGAAGAGTTGAGAGCAGAGTATGGTGAATCAGCTCAAGTGGTTCTCATTGACCTAACACAGAAGGGGGATGCTAGATTGAAATCCATGGCAGCTAAGATATTGGCTCATCTGGAGGTCTTGCAAGTTCAATCTAGTTACTTCTGA 1446 0.417 MNKILMATALSRMELTDQCRASLGKNGAIECLVNMFNSGKLEAKLSALNALQNLSSLTENVKRMARSGIIVSLLQLLFSVTSVLMTIREPASVILARIAKSEAVLVNPEVTQQMLSLLNLSSATVQCHLLEALNSIASHPSASKVRNIMNEKGALQLILPFLMESNTKVRANALNLLYTLSNHIPQELTEHLGVSHLHNIVHIISSSSWDTEKVAAIGILSNLPVSNRHVTDILHRENLLPALIAVVNSSTEDKTTAILLEENVAGVLIRFTVSSDKKSQLLSAEHRVIPLLVNFLSSGSSVAKCRAAASLTQLSQNTLSLRKPRKSMWPCVPPSAGGAYCEVHDGYCFVNRSFCIVKAGAISPLIQILEGQDREADEAALSVLATLMQDEIWENGANFLAKMSCVQAIIKVLEVGNVKAQEKALWILERVFRVEELRAEYGESAQVVLIDLTQKGDARLKSMAAKILAHLEVLQVQSSYF* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01391 481 SMART arm_5 349 389 IPR000225 GO:0005515
Pte15g01391 481 SMART arm_5 276 316 IPR000225 GO:0005515
Pte15g01391 481 SMART arm_5 142 182 IPR000225 GO:0005515
Pte15g01391 481 SMART arm_5 16 56 IPR000225 GO:0005515
Pte15g01391 481 SMART arm_5 57 100 IPR000225 GO:0005515
Pte15g01391 481 SMART arm_5 393 433 IPR000225 GO:0005515
Pte15g01391 481 Gene3D - 3 327 IPR011989 -
Pte15g01391 481 SUPERFAMILY ARM repeat 23 436 IPR016024 -
Pte15g01391 481 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 481 - -
Pte15g01391 481 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 27 69 IPR000225 GO:0005515
Pte15g01391 481 Gene3D - 344 474 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01391 Pte-Chr15 10888731 10890176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01391 32 481 U-box Gene Family AT1G76390 27.291 4.38e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01391 K08332 - jre:108981193 643.654