Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01382 ATGTCCACCCCGCATGCAGATTCCAATTCCAAGTGCAATTTCAACAATGATCCAGTGTCGTGCCTTTATGATCTATTGTGTTCAGAAGCGCCAAGTTGGACTTCACACAAGGATGAATGTACAGCTTCTGATCCACAAGAAAGGCTAGAAAGTCTGAGTCGTCAATCTGGCAATAGGTTCTGTGCTGATTGTGGATCACCAGATCCAAAATGGGTATCATCAAGCCTTGGAGTTTTCATATGCATCAAGTGCTCTGGTGTACATAGAAGCCTTGGAGTGCATGTATCTAAGGTTCTATCAGTGAAGCTTGACGAATGGACGGAAGAAGAAGTTGACACTTTAGTAAAACTTGGTGGAAATAATTTACTGAATAAAAAATATGAAGCTTGCATTCCGAAGAACATTACAAAACCAAATCCAAACTCTAACAACGAGGAGCGCTCAGATTTTATTAGGAGAAAATATGAGCAGCTACAGTTTCTGCGATATGACGACATGTCTCTCTCATTCCATTCATCTGATGACGCAATGGCTTGTCCATTAAATCCGAATAGAAGACACTCATCCACTCACGGCAGTTCATCAGATACTCATTATGCATTTGATAAGAAACTATTTGAGCATGCCACCAAAAGCCGCATTGGGCAGGCACTTTGCAGTAGTTGGGTCAGAAAAGAGCCGGATCCAAAGGTTGCCAAGAAGAGCCATTCACTGGCAGGTATGATCGAATTTGTTGGACTGATTAAAGTTAATGTACTTCGAGGCACCAACCTGGCTGTCAGAGATGTGAAGAGTAGTGACCCTTATGTCGTCATTGGTATTGGTCAACAGTCAGTAAAGACAAAGGTAATAAAGAACAGTTTGAACCCTGTATGGAATGAAAGCCTAATGCTCTCGATACCTGAGGAAATCCCTCCTCTGAAAGTGTCTGTGTATGATAAAGACAAGTTCTCTTATGATGACTTCATGGGTGAGGCTGAGATAGATATACATCCCTTGCTTGATGCGGCAAAGGCTTGTGAGAAGTCCGACATAAGGGAGACAGCAGAACTTGAGAAGTGGTTAGAAAACATGGGGAACCACCAATTCATAGATGGTATCATCAACATAGTTGATGGGAAGGTTAGACAGGAAACTTTGGTGATGCTGCAAAATGTTGAGAAGGGTTGTATAGAGATCGAGCTCGAGTGTCTTCCTCTAACTCAATAG 1209 0.4227 MSTPHADSNSKCNFNNDPVSCLYDLLCSEAPSWTSHKDECTASDPQERLESLSRQSGNRFCADCGSPDPKWVSSSLGVFICIKCSGVHRSLGVHVSKVLSVKLDEWTEEEVDTLVKLGGNNLLNKKYEACIPKNITKPNPNSNNEERSDFIRRKYEQLQFLRYDDMSLSFHSSDDAMACPLNPNRRHSSTHGSSSDTHYAFDKKLFEHATKSRIGQALCSSWVRKEPDPKVAKKSHSLAGMIEFVGLIKVNVLRGTNLAVRDVKSSDPYVVIGIGQQSVKTKVIKNSLNPVWNESLMLSIPEEIPPLKVSVYDKDKFSYDDFMGEAEIDIHPLLDAAKACEKSDIRETAELEKWLENMGNHQFIDGIINIVDGKVRQETLVMLQNVEKGCIEIELECLPLTQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01382 402 SMART arf_gap_3 46 167 IPR001164 GO:0005096
Pte15g01382 402 Gene3D Arf GTPase activating protein 29 167 IPR038508 -
Pte15g01382 402 PRINTS HIV Rev interacting protein signature 77 94 IPR001164 GO:0005096
Pte15g01382 402 PRINTS HIV Rev interacting protein signature 58 77 IPR001164 GO:0005096
Pte15g01382 402 PRINTS HIV Rev interacting protein signature 98 119 IPR001164 GO:0005096
Pte15g01382 402 Pfam C2 domain 247 337 IPR000008 -
Pte15g01382 402 SUPERFAMILY ArfGap/RecO-like zinc finger 46 162 IPR037278 -
Pte15g01382 402 SMART C2_3c 247 342 IPR000008 -
Pte15g01382 402 ProSiteProfiles C2 domain profile. 227 344 IPR000008 -
Pte15g01382 402 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 42 402 IPR044518 GO:0005096|GO:0005543
Pte15g01382 402 CDD C2_ArfGAP 245 389 - -
Pte15g01382 402 CDD ArfGap 49 155 - -
Pte15g01382 402 FunFam stromal membrane-associated protein 1 isoform X1 32 166 - -
Pte15g01382 402 Gene3D C2 domain 245 400 IPR035892 -
Pte15g01382 402 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 245 338 IPR035892 -
Pte15g01382 402 ProSiteProfiles ARF GTPase-activating proteins domain profile. 46 168 IPR001164 GO:0005096
Pte15g01382 402 Pfam Putative GTPase activating protein for Arf 47 161 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01382 Pte-Chr15 10832212 10839410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01382 46 403 C2H2 Transcription Factor Family AT4G21160 45.810 5.24e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01382 K12486 - qsa:O6P43_029685 502.671