Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01356 ATGAAGAGGCTGCAAAAAAATGATAAGATACACAAAACTCAGACTTATGATCGGAAACAGGAGAGTAGAGGCAACAGCTCAACAAAGGGAAAATGGACTCCACAAGAAGACAGAAAGTTGGTTAAATTGGTGAAGCAACATGGAGAGAAGAGATGGACTCAAATAGCTGAAGCCATTGGCGGACGAGTTGGGAAACAATGTCGGGAGCGTTGGCAGAATCACTTACGCCCAGATCTTAGGAAGGATGAATGGACTGAAGAAGAGAACGCGATATTGATTGAAGCTCATCAACAACTGGGAAACAGATGGACGGAAATTGCCAAGAGGCTGCCTGGAAGATCGGAGAATACGATCAAGAATCATTGGAATGCTACAAAGAGAAAGCAGAATGTTAAGGGCAAATGCAAGAATGCAGATTCCAGCACTCTCCAGATGTACATTCATAGCATTACCGCCCCCGCTGCAACTAATTCTCATGACTCTGCCACCAATTTCCCAGCAGTTGCAGTTGATCACAATGTTATGTCTGCCCATGTTCGGCCGCAGAGCTCCGAGGAGTTTGTCCTCCCGGCGGCTAATGTTCCGAAAAACATCAACTTGAGTGGTTTTGCTGATGCAAACAACAGTATGTTAGCAAAACACAGCAGTCGCTAA 654 0.4526 MKRLQKNDKIHKTQTYDRKQESRGNSSTKGKWTPQEDRKLVKLVKQHGEKRWTQIAEAIGGRVGKQCRERWQNHLRPDLRKDEWTEEENAILIEAHQQLGNRWTEIAKRLPGRSENTIKNHWNATKRKQNVKGKCKNADSSTLQMYIHSITAPAATNSHDSATNFPAVAVDHNVMSAHVRPQSSEEFVLPAANVPKNINLSGFADANNSMLAKHSSR* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01356 217 PANTHER MYB PROTEIN-RELATED 29 152 - -
Pte15g01356 217 ProSiteProfiles Myb-like domain profile. 24 75 IPR001005 -
Pte15g01356 217 Pfam Myb-like DNA-binding domain 32 88 - -
Pte15g01356 217 SUPERFAMILY Homeodomain-like 28 122 IPR009057 -
Pte15g01356 217 CDD SANT 83 126 IPR001005 -
Pte15g01356 217 FunFam Transcriptional activator Myb isoform A 28 81 - -
Pte15g01356 217 MobiDBLite consensus disorder prediction 8 25 - -
Pte15g01356 217 SMART sant 28 77 IPR001005 -
Pte15g01356 217 SMART sant 80 128 IPR001005 -
Pte15g01356 217 MobiDBLite consensus disorder prediction 1 38 - -
Pte15g01356 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 79 IPR017930 -
Pte15g01356 217 Gene3D - 28 80 - -
Pte15g01356 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Pte15g01356 217 Gene3D - 82 144 - -
Pte15g01356 217 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Pte15g01356 217 CDD SANT 31 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01356 Pte-Chr15 10584381 10586066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01356 20 158 MYB Transcription Factor Family AT4G18770 54.610 5.70e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte15g01356 Myb_DNA-bind_6 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01356 K09422 - qsu:111999145 193.356