Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01347 ATGACTGCAACTGCTTCCGGCGCTCCACGGTATGCACCACCGGACCCTACCCTTCCAAAGCCTTGGAGAGGTCTTGTTGATGGAAAAACTGGTTATTTGTACTTCTGGAATCCAGAGACTAATGTTACCCAGTACGAGAGGCCTACAAGCTCCTTTCCTGCACCAAATCCTCCTTCTTCAGCTCTTATTTCTTCTGTTCAAGTTCCAAAACAATCATCTCAAGGAAACCAACATGAATACAGCCCTGGCCGTGATCGGTATGACAGAAGCAACAATGCTGGATCAAATTGTGAGGCAGGAAATATGAAGTATCAGGGTGCAAAAGGTGGAAATATTCATTCCCAGAATATTCCAACTGTGATGGCTTCTGATAGTGATTCAACTAGAGCTCACACAGATTCAGGGGATGGATTGTCTGGAGATTCATATCGCCGTCGACATGAAATAACAATCAATGGGGACAACGTTCCTTTACCTTTTACCTCATTTGAGTCTACTGGGTTTCCTTCTGAGCTTCTTAGAGAGGTACAAAATGCTGGATTCTCTGCCCCTACTCCAATTCAGGCACAGTCATGGCCGATTGCCCTCCAAAGTAGAGATATAGTTGCTGTTGCTAAAACTGGTTCTGGGAAAACGTTAGGGTATTTGATACCAGGGTTTATTCACCTCAAGCGCTCCCAGAAAGACTCGAGATTAGGTCCAACGGTCTTGGTATTGTCCCCAACCAGGGAACTAGCAACACAGATACAAGATGAAGCAGTGAAGTTTGGGCGCTCATCGAGAATTACTTGTGCTTGTTTGTATGGAGGAGCGCCAAAAGGTCCTCAATTAAGAGATATTGACCGGGGAGTAGATATTGTTGTAGCCACTCCTGGCCGTCTAAATGATATTATCGAGATGCGAAGAATTAGTCTCCATCAAGTCTCCTACCTTGTTCTTGATGAGGCTGATAGAATGCTTGATATGGGCTTTGAACCTCAAATAAGGAAGATAGTGAATGAGGTTCCTGCTCGCCGTCAGACCTTGATGTTCACTGCAACATGGCCAAAGGAGGTTAGAAAAATTGCGGCAGATCTACTGGTCAGTCCTGTGCAGGTTAACATCGGCAATGTGGATGAGCTGGTTGCCAACAAATCTATCACTCAGCATGTTGAAGCATTGGCACCTATGGAGAAACATAGGCGCTTGGAGCAGATACTGCGTTCACAAGAACCAGGATCTAAAATAATTATATTCTGTTCTACGAAAAAGATGTGTGATCAGCTTGCCCGTAACCTTGCTCGGCAGTTTGGTGCTGCAGCTATACATGGAGACAAGTCTCAGGCAGAGAGGGATCATGTTCTAAGTCAGTTTCGTACTGGGAGGTCACCAGTACTCGTAGCTACTGATGTTGCTGCTCGAGGCCTTGACATCAAAGATATCAGAGTGGTTGTCAATTATGACTTCCCAACAGGCGTGGAGGATTATGTGCATAGGATTGGAAGAACTGGCAGGGCAGGAGCAACAGGTTTGGCTTTCACATTTTTTGGAGACCAGGATGCCAAATATGCCTCAGATCTGATAAAAGTTTTAGAAGGTGCAAACCAGCATGTCCCTCCACAAATCCGTGAGATGGCGTCTCGTGGTGGAGGGATGAACAGATTTAGGAGATGGGGCTCTGGTGGTCGTGACAGCGGTCGCGGTGGCCGTAGTGATTCTGGCTATGGTGGACGTGGTGGTTATGGAATCTCTCCTTCCAATAGGCCAGACCGGAGTGGTGGTCATGGATATGACTATGAGTCTCATGATAGGTATGGACGTGGTAGAAGCCCTGGTAAAGAATCGAATTGGGGTGATTATAAAAAAAGCTTTGGCCGTGAACGCAGCCGTTCACCACCACCCAGTTTCCACAAGGCCATGATGGAACGGACTCGTGACAAAGGTGATAATGGCAGGGAAGAAAAAGGTTTTATAGGTTCACAGGGTGGTGGGAAAGAAAGCTACTGGAAGCACCAAGACTAA 2001 0.4648 MTATASGAPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTSSFPAPNPPSSALISSVQVPKQSSQGNQHEYSPGRDRYDRSNNAGSNCEAGNMKYQGAKGGNIHSQNIPTVMASDSDSTRAHTDSGDGLSGDSYRRRHEITINGDNVPLPFTSFESTGFPSELLREVQNAGFSAPTPIQAQSWPIALQSRDIVAVAKTGSGKTLGYLIPGFIHLKRSQKDSRLGPTVLVLSPTRELATQIQDEAVKFGRSSRITCACLYGGAPKGPQLRDIDRGVDIVVATPGRLNDIIEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVRKIAADLLVSPVQVNIGNVDELVANKSITQHVEALAPMEKHRRLEQILRSQEPGSKIIIFCSTKKMCDQLARNLARQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAFTFFGDQDAKYASDLIKVLEGANQHVPPQIREMASRGGGMNRFRRWGSGGRDSGRGGRSDSGYGGRGGYGISPSNRPDRSGGHGYDYESHDRYGRGRSPGKESNWGDYKKSFGRERSRSPPPSFHKAMMERTRDKGDNGREEKGFIGSQGGGKESYWKHQD* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01347 666 MobiDBLite consensus disorder prediction 46 80 - -
Pte15g01347 666 Gene3D - 9 55 - -
Pte15g01347 666 MobiDBLite consensus disorder prediction 533 666 - -
Pte15g01347 666 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 539 - -
Pte15g01347 666 Pfam DEAD/DEAH box helicase 185 355 IPR011545 GO:0003676|GO:0005524
Pte15g01347 666 SUPERFAMILY WW domain 13 51 IPR036020 GO:0005515
Pte15g01347 666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 366 IPR014001 -
Pte15g01347 666 FunFam probable ATP-dependent RNA helicase DDX17 108 369 - -
Pte15g01347 666 SMART ww_5 17 50 IPR001202 GO:0005515
Pte15g01347 666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 539 IPR001650 -
Pte15g01347 666 MobiDBLite consensus disorder prediction 108 135 - -
Pte15g01347 666 CDD WW 19 49 IPR001202 GO:0005515
Pte15g01347 666 MobiDBLite consensus disorder prediction 1 23 - -
Pte15g01347 666 MobiDBLite consensus disorder prediction 46 142 - -
Pte15g01347 666 MobiDBLite consensus disorder prediction 586 647 - -
Pte15g01347 666 SMART ultradead3 180 383 IPR014001 -
Pte15g01347 666 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 161 189 IPR014014 GO:0003724
Pte15g01347 666 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 312 320 IPR000629 -
Pte15g01347 666 Pfam Helicase conserved C-terminal domain 392 500 IPR001650 -
Pte15g01347 666 ProSitePatterns WW/rsp5/WWP domain signature. 22 48 IPR001202 GO:0005515
Pte15g01347 666 CDD SF2_C_DEAD 380 509 - -
Pte15g01347 666 ProSiteProfiles WW/rsp5/WWP domain profile. 16 50 IPR001202 GO:0005515
Pte15g01347 666 Gene3D - 371 542 IPR027417 -
Pte15g01347 666 Gene3D - 139 370 IPR027417 -
Pte15g01347 666 SMART helicmild6 420 500 IPR001650 -
Pte15g01347 666 FunFam ATP-dependent RNA helicase RhlB 370 542 - -
Pte15g01347 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 517 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01347 Pte-Chr15 10470006 10475379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01347 159 538 Eukaryotic Initiation Factors Gene Family AT3G19760 35.770 1.38e-68 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01347 K12823 - qsa:O6P43_008943 929.087