Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01344 ATGGACAAAATGGTGTGCAACTCATCCCAGGATGCTCAAGTGAGAAAAGGACCATGGACAGTGGAGGAGGACATGATTCTAATCAGCCATATTGCAACTCATGGTGAAGGTGTTTGGAACTCTTTGGCCAAATCTGCTGGCCTTAAGCGGACGGGAAAGAGTTGTAGGCTCCGCTGGCTAAACTATCTTCGGCCTGATGTCAGGCGAGGTAATATTACACCAGAGGAAGAGCTTCTGATCATGGAGCTTCATGCCAAATGGGGAAATAGGTGGTCAAAAATCGCCAAGCATCTACCAGGAAGAACTGACAATGAGATAAAGAATTACTGGAGGACTAGAATCCAGAAGCACATCAAGCAAGCTGAGAATTATCAACAGCACACTTCTCAAGGGGGACAGATTGAACAAGCTAGCAGCAGCAGCAGCAGCAACATCAGCCATGTATCTTGCTTGAATCAACAGATGGACACCTATTATTCATTGACATACCAAGGGGGCATGGAGACATTTCCAAACATTTTTCCTACTGTCCCACCAAGTACTGAAATGATCTATTGGAGCATGGATGATCTTTGGTCTATGCAATAA 588 0.4507 MDKMVCNSSQDAQVRKGPWTVEEDMILISHIATHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEELLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENYQQHTSQGGQIEQASSSSSSNISHVSCLNQQMDTYYSLTYQGGMETFPNIFPTVPPSTEMIYWSMDDLWSMQ* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01344 195 Gene3D - 73 144 - -
Pte15g01344 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pte15g01344 195 SMART sant 15 65 IPR001005 -
Pte15g01344 195 SMART sant 68 116 IPR001005 -
Pte15g01344 195 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pte15g01344 195 MobiDBLite consensus disorder prediction 121 140 - -
Pte15g01344 195 CDD SANT 73 112 IPR001005 -
Pte15g01344 195 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pte15g01344 195 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pte15g01344 195 CDD SANT 18 63 IPR001005 -
Pte15g01344 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pte15g01344 195 FunFam Myb transcription factor 16 68 - -
Pte15g01344 195 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pte15g01344 195 Gene3D - 16 68 - -
Pte15g01344 195 FunFam Myb-related protein 305 73 145 - -
Pte15g01344 195 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Pte15g01344 195 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 10 128 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01344 Pte-Chr15 10407810 10409799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01344 10 192 MYB Transcription Factor Family AT3G01530 55.978 1.44e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte15g01344 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01344 K09422 - gmx:778046 288.115