Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01340 ATGGCTAGCATGCATATGAATTGGTCCTCTGTCTTGGCAATTTTCTTAGTGGCTTCTGTCGTTCCAAATCTTTCTGCAGCCAAGCAATCCAAGGTTGCTAGCATGCGCTTGAATCAGATTGATAAATGTTGGAGATGGAACCCAGATTGGAGGAAAGATCGTTCTCAGCTTGCCATGTGCTCAGTTGGATTTGCTGGGATGATGAGTAAGAACGTTGGGGATGACCTAACACATTACTTAGTTACTGACCCCAGTGATAACCCAACGAACCCAACGCCTGGAACCCTTAGATATGGAGTAACCATGATCAAAGGTAAAAAATGGATCTCTTTCCAGACAGACATGACAATCAAACTTGAGAAACCACTTCTCATCAGTAGCTTCACTGCCATGGATGGCCGAGGTGCCAACGTTCACATCGCTGGCAATGCATGCTTGACTGTCTTCAAGGCAAGCAATGTAATTATCCAGAGTCTTCGTATTCATCACTGCAAGGCTCAACCACCCAGTTCAGTGATGGGTCCTGATGGACAAATGGTAAGTATTGGTCCAGTGGATGGGGATGCAATCAGGTTGGTGACTGCATCCAAGGTCTGGATAGACCATAACACTCTGTATGAGTGTGATGATGGGCTTCTTGATGTCACTCGTGGTTCCACAAATATAACAATCTCAAACAACTGGTTCAGATACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGGTTCCTGCGTGACAAGAACATGAAGGTGACTGTAGTGTACAATCATTTTGGACCGAATTGCAACCAACGTATGCCAAGGGTTCGCCATGGGTATGCACACGTAGCAAATAACCTGTACCAAGGTTGGCAGAATTACGCCATTGGTGGAAGCATGTCTCCTAGCATTAAAAGTGAAGCCAACCTTTTCATTGCACCCAAATCAGGAAGCAAGGAGGTTACATGGAGAAATGGTGATAAGGAAGATGTAGGTTCATGGAAATTTTACTCAGTGGGGGATGTTTTTGAGAATGGTGCTGTTTTCGACCTTCAATCAGGTGTGGGTGGTGCAAAGCCTAACTATAGCGAAGCACAGCGTTTCATAGTTGCAGATGCTCGCCAGGTGAAGTTGCTGACAAGTTCATCTGGGGCTTTAAAATGCACCAAAACTTCTGTATGTTAG 1167 0.4507 MASMHMNWSSVLAIFLVASVVPNLSAAKQSKVASMRLNQIDKCWRWNPDWRKDRSQLAMCSVGFAGMMSKNVGDDLTHYLVTDPSDNPTNPTPGTLRYGVTMIKGKKWISFQTDMTIKLEKPLLISSFTAMDGRGANVHIAGNACLTVFKASNVIIQSLRIHHCKAQPPSSVMGPDGQMVSIGPVDGDAIRLVTASKVWIDHNTLYECDDGLLDVTRGSTNITISNNWFRYQDKVMLLGHDDGFLRDKNMKVTVVYNHFGPNCNQRMPRVRHGYAHVANNLYQGWQNYAIGGSMSPSIKSEANLFIAPKSGSKEVTWRNGDKEDVGSWKFYSVGDVFENGAVFDLQSGVGGAKPNYSEAQRFIVADARQVKLLTSSSGALKCTKTSVC* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01340 388 SUPERFAMILY Pectin lyase-like 38 379 IPR011050 -
Pte15g01340 388 SMART amb_all 114 311 IPR002022 -
Pte15g01340 388 Pfam Pectate lyase 131 305 IPR002022 -
Pte15g01340 388 PANTHER PECTATE LYASE 18-RELATED 30 385 IPR045032 GO:0030570
Pte15g01340 388 PRINTS Pollen allergen Amb family signature 359 382 IPR018082 -
Pte15g01340 388 PRINTS Pollen allergen Amb family signature 328 352 IPR018082 -
Pte15g01340 388 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Pte15g01340 388 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Pte15g01340 388 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Pte15g01340 388 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Pte15g01340 388 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Pte15g01340 388 Gene3D - 37 381 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01340 Pte-Chr15 10357973 10359663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01340 68 320 Polysaccharide Lyase AT5G09280 73.123 1.15e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01340 K01728 - qsu:112015873 582.793