Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01339 ATGGAGAGAAGAGTTATTGATTCCCCAGAAACTCACAGGAACAAGTGTGCAGCATGCTTTAGACAATTCAACAAAATGGAGCATCTTGTGGAACACATGAGGATCTCATTTCACTCAGTACATGAACCTGCATGTGGAGTCTGTAAAAAACACTGTAGATCTATGGATTCTCTCAGGGAACATGTTATAGGACCGTTGCCAAAACAAGAATGCAGAGATATTTTTGTCAACGGAGGTTGTAAATTCTGCTTAGCAACCCTTGACAGTCCTTATGCTATGAGGATTCACCAACAAACATGTCAACTCTCTGGTGTAAATGCTGGACTGCATGCTCGCTTTGCTAATTTGGGAATTAGGGATAGCCTAAGTACCACAAGTCATGGTGGAACCCTAGGGCCACAAGCAGTTGCACTTGCTTGCAAAATGGTAGGCGGCGGCAGTGATGGTTCCCTTGACATATGTGCTAGGGTTTGCATCATTGATGAATCTGAAAACATCATTTTCCACACTTTTGTCAAGCCAACATTACCAGTCACAAACTATAGGTATGAAACAACCGGCATAAGATCAGAATACTTGAGGGATGCAATGCCATTGAGACAAGTTCAGAGGAAGATTCAAGACTTCCTCTGCAATGGGGAACCCATGTGGAAAATAAGACCTAAGGGAGGAAAAGCCAGGATTCTTGTCGGCCATGGTTTGGACCATGACCTCGACCGACTGCAAATAGAATATCCAGCGGCAATGATCAGCAAGTGCATGCATATATGTATCGGCAGGGACACAGCCAAATATCCTCCGCTTATGAAAACAAGCAAGCTCAGTAATTCCCTCAAGTACTTGGCACAAACATATCTCGGGTATGAAATTCAAAATGGGATACAAGATCCTTACGAGGACTGTGTTGCAACTATGGCTCTTTACAAGAGACAAAGAGGCCAGAAGCACAAAATTGAGGACTACCCTTTAGCTACCGACCCACAAAACAGAAACAACTTTGCTTCATGGAGGCAAAGTGAACTGGAGAGAATGAGCCCTGAACAAATGATGGAGATCTCTAGGTCCGACTACTACTGTTGGTGCTTGGACTCGAGAAATTAA 1101 0.4369 MERRVIDSPETHRNKCAACFRQFNKMEHLVEHMRISFHSVHEPACGVCKKHCRSMDSLREHVIGPLPKQECRDIFVNGGCKFCLATLDSPYAMRIHQQTCQLSGVNAGLHARFANLGIRDSLSTTSHGGTLGPQAVALACKMVGGGSDGSLDICARVCIIDESENIIFHTFVKPTLPVTNYRYETTGIRSEYLRDAMPLRQVQRKIQDFLCNGEPMWKIRPKGGKARILVGHGLDHDLDRLQIEYPAAMISKCMHICIGRDTAKYPPLMKTSKLSNSLKYLAQTYLGYEIQNGIQDPYEDCVATMALYKRQRGQKHKIEDYPLATDPQNRNNFASWRQSELERMSPEQMMEISRSDYYCWCLDSRN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01339 366 ProSitePatterns Zinc finger C2H2 type domain signature. 16 38 IPR013087 -
Pte15g01339 366 FunFam RNA exonuclease 4 131 327 - -
Pte15g01339 366 Pfam Exonuclease 151 308 IPR013520 -
Pte15g01339 366 Gene3D Classic Zinc Finger 2 64 - -
Pte15g01339 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 43 IPR013087 -
Pte15g01339 366 SMART exoiiiendus 134 317 IPR013520 -
Pte15g01339 366 CDD REX4_like 136 309 IPR037431 GO:0006364|GO:0008408
Pte15g01339 366 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 363 IPR047021 GO:0004527
Pte15g01339 366 Gene3D - 133 326 IPR036397 GO:0003676
Pte15g01339 366 SUPERFAMILY Ribonuclease H-like 148 314 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01339 Pte-Chr15 10348903 10350922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01339 3 364 C2H2 Transcription Factor Family AT3G27970 72.099 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01339 - - qsu:111996861 612.068