Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01327 ATGTCAGAAAGAAAAGATCGTAAGTTGGTTTCAGATCGTACCCATAGGAAGATGTCTTGGGTAGGATATCAGGTACAGCAAAAAGATGATTATGTGAGCTACCCACCGCCTCTTTCTCCTTCATCTTCTTATGCATACTTTGGTGATTTACATAAAGAATCCACACATTCTTCATCAATTACTAGAATTAATCCAGCTGTTCTTTTCATAATAGTGATTCTAGCCGTGCTGCTTTTCATTTCTGGTCTGCTTCTTCTCCTTGTAAGATTTTTAGTGAAGCACCCATCCTCTGCAGAATCTTCTCCATCAAATAGGTATCTTGAAATTTCTACCACTGATGCACTTCAGAGACAGCTGCAACAGCTATTTCACATCCATGACTCTGGTTTGGATCAAGGATCCATTGATGCGCTTCCTGTTTTCCAGTATAAAGAGATAATGGGCGCTAAAGAGCCATTCGATTGTGCAGTTTGTCTGTGTGAGTTTACTGAGAAGGACAAGCTGAGATTGCTTCCTATGTGCGGCCATGCTTTTCACATCAATTGTATAGGCACTTGGCTACTATCCAACTCAACATGTCCTCTTTGTAGAGACACCCTTTTCACACCTGAGTTCTGTCTGGAGAACCCAATTTCCGAATTTGATGATTTTAGAGAACAAGATGAGTGTCCTGGAAATGGAGAAAATGGATTTTCTTCTAGACAAAAAACTGTTCAAATTGAAGAGGTTGTTGCTTCGAATGGTGTTTTACCGGTTAGACTCGGTAAATTCCGAACATTGAATGAGGAAAAGGGAGATTCTGAAGGAGAGACCAGCTGCAGTAAGTTAGATGCAAGGAGGTGTTTCTCAATGGGGTCTTACCAATATGTGCTTGGTAATTCAGACCTAAGAATCACTTTGAACCATGATAGGCAGGATCGTGATAAGAAGCGTACAGATGGAAATGAGAAAACTGAGAATGAAAGGGATGAGGAAGCCAAGAAAATTAGAACTGTAACTAAAGGTGAGAGCTTTTCTGTGTCCAAGATTTGGTTGTGGTCAAAGAAGGACAAGTTTTCCAGTTCTTCAGATGAGCATATGGGTCTTCCATCTTCATTCAACACAGAGCTGCCTTGGTTAAGGAAAACACAAGGAACATGA 1140 0.4061 MSERKDRKLVSDRTHRKMSWVGYQVQQKDDYVSYPPPLSPSSSYAYFGDLHKESTHSSSITRINPAVLFIIVILAVLLFISGLLLLLVRFLVKHPSSAESSPSNRYLEISTTDALQRQLQQLFHIHDSGLDQGSIDALPVFQYKEIMGAKEPFDCAVCLCEFTEKDKLRLLPMCGHAFHINCIGTWLLSNSTCPLCRDTLFTPEFCLENPISEFDDFREQDECPGNGENGFSSRQKTVQIEEVVASNGVLPVRLGKFRTLNEEKGDSEGETSCSKLDARRCFSMGSYQYVLGNSDLRITLNHDRQDRDKKRTDGNEKTENERDEEAKKIRTVTKGESFSVSKIWLWSKKDKFSSSSDEHMGLPSSFNTELPWLRKTQGT* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01327 379 Pfam Ring finger domain 154 197 IPR001841 -
Pte15g01327 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 58 344 - -
Pte15g01327 379 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Pte15g01327 379 SMART ring_2 155 196 IPR001841 -
Pte15g01327 379 FunFam RING-H2 finger protein ATL46 117 202 - -
Pte15g01327 379 MobiDBLite consensus disorder prediction 302 331 - -
Pte15g01327 379 MobiDBLite consensus disorder prediction 353 379 - -
Pte15g01327 379 MobiDBLite consensus disorder prediction 357 379 - -
Pte15g01327 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 202 IPR013083 -
Pte15g01327 379 CDD RING-H2_EL5-like 154 197 - -
Pte15g01327 379 SUPERFAMILY RING/U-box 135 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01327 Pte-Chr15 10266394 10268851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01327 82 356 C3H Transcription Factor Family AT2G18650 39.623 4.54e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01327 - - cave:132183306 468.003