Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01319 ATGATCTCGAGTCGCTGTGCTGCCTGCAAGAGTCAAAGGAGGAGATGCCCTTCTGACTGCATTTTCTCTCCTTATTTCCCTTCCAACGACCCGCATAGATTCAACTGTGTTCATAAAATATATGGTGCCAGTAATGTGGGAAGAATGCTTCAGGAAATCCCATACCATCTCAGATCACAAACTGCAGATTCATTGCATTATGAAGCACAATGTCGTTTACAAGATCCTGTATATGGCTGTGTTGGGATCATTACTCACTTGCACCAACAAATTGTTGATGTTGAAACTCAGTTAGCCAAAACCCAAGCTCAGATAGCACTTCATAATAATGGGAACGCACCTTCAAATTCAGATGTGCAACATGAACCAAATTCCAAGTATTGCTTTCAAGAGGGATCATCCAGTCTATCTCCATGGCTCCACTAA 426 0.4225 MISSRCAACKSQRRRCPSDCIFSPYFPSNDPHRFNCVHKIYGASNVGRMLQEIPYHLRSQTADSLHYEAQCRLQDPVYGCVGIITHLHQQIVDVETQLAKTQAQIALHNNGNAPSNSDVQHEPNSKYCFQEGSSSLSPWLH* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01319 141 Coils Coil 84 104 - -
Pte15g01319 141 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Pte15g01319 141 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 122 - -
Pte15g01319 141 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01319 Pte-Chr15 10218451 10218876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01319 1 107 AS2 family AT3G26660 60.748 3.05e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte15g01319 LOB 1.6e-37 No_clan