Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01306 ATGGAGTTTCAAGAGGGTCTTAGGATTTTGTCACATAAACCTAAATGGGGTTTTGGTAAAATATCAGCAACGGAGCCTGTCACCCTTGGGCGCAAATGTAATATTCTCGGTAGGTCATCATCGTCTGACGTACCTTCCAAGCCTGAGAGCAAGCCACCCCCTAAGGAGTTCCTTTGTCCCTTATCTGGATTTCTCATGGCGGACCCAGTGATTGTCACTTCTGGTCACTCATTTGAGCGAGCCTCTGTTCAAGCATGCAAAACCTTAGGTTTCACTCCTGCAATGAGTGATGGATCCACACCTGATTTCTCCACGTTGATTCCCAACCTTGCCCTCAAATCCGCCATTATCAATTGGTGTAAGATCTGCTCCATTGACATTCCCAAACCTCCAGATTCCAACTGTACCGAGAAACTCATTCGTGCAATCATGGCTACCCAGAATGGCAACCGCAACCGTGGTCAACCCCACGAAGCAGAAGTCCATGAAAAGGAACTGCTTCAAGATGTTAAGGAAGTGACTCACTGCTCGGATCATCTATACACTAGCTCAGAAGAATCTGTAGCCTTCTCTGCCTCCACCCCACCTATGCAACTTTGCACTAGACCTAGCTCCCATTCTTCTCTATCATCCTCAGAAATCCAGACAATTGCATCTGTGTCGCCCGAGGAAGAAATCTTACTATATCTTAAAAGTCCTCGATTGTTCGAGGTCGAACAAGCGGTGATATCACTGAGGAATCTCACTAGGAACAGAGAGAAAACGAGGGTTCCATTCTGTACACCAAAGTTACTCTCAGCTCTGCCCGCCTTGATTACTTCCAAGTACACCAGCCTTCAGGTCAACGCAGTTGCAGCGTTGGTGAATCTCTCACTGGAAAAGGTCAACAAGATTAAGATAGTACGGTCAGGGTTGGTTCCCCCATTGATAGAAGTGTTGAAAGGTGGATATCCTGAATCGCAGGAACATGCTTCTGCTGCACTCTTCAGCTTAGCCCTTGATGATAAGAACAAGGCAGCAATTGGTGTACTGGGTGCTTTGCCGCCGTTGATTCACTTGCTCCGTTCTGAGAGCGAGCGGACTAGGCATGACTCAGCACTCGCCTTGTATCATCTCTCACTCCTTCAAAGCAACAGGGTGAAGTTGGTCAAACTTGGGTCAGTCCCTCTTCTAATGGGCATGGTTAAGTCGGGAAACATGACGGGTCGGGTTCTGCTCATTTTGTGCAATTTGGCTTCAGGTGTGGATGGGCGAGCTGCATTGTTGAAGGCGGGTGCGGTGGAGTACTTGATCGGTTTATTGGGTGGGAACGATTCCATAACCGGGTCAACACGGGAGAGCTGTGTGACATTGTTGTATGCATTGAGTCATGTTGGCTTGAGATTCAAGTCATTGGCAAGGTCAGCTGGAGCAGTGGAAACATTGAAAAAAATAGAGAAGATGGGAAGTGAGAAGGGAAGAGAGAAATTGAGAAGGATATTGGAGTCTTTGGAGGAGGGGCAGGAAGAGATGGACTGGGAGGAATTTCTTGACTCTAGCTTTTCGAGTCCACAATGTGGTCTTTCTGACTAG 1572 0.4758 MEFQEGLRILSHKPKWGFGKISATEPVTLGRKCNILGRSSSSDVPSKPESKPPPKEFLCPLSGFLMADPVIVTSGHSFERASVQACKTLGFTPAMSDGSTPDFSTLIPNLALKSAIINWCKICSIDIPKPPDSNCTEKLIRAIMATQNGNRNRGQPHEAEVHEKELLQDVKEVTHCSDHLYTSSEESVAFSASTPPMQLCTRPSSHSSLSSSEIQTIASVSPEEEILLYLKSPRLFEVEQAVISLRNLTRNREKTRVPFCTPKLLSALPALITSKYTSLQVNAVAALVNLSLEKVNKIKIVRSGLVPPLIEVLKGGYPESQEHASAALFSLALDDKNKAAIGVLGALPPLIHLLRSESERTRHDSALALYHLSLLQSNRVKLVKLGSVPLLMGMVKSGNMTGRVLLILCNLASGVDGRAALLKAGAVEYLIGLLGGNDSITGSTRESCVTLLYALSHVGLRFKSLARSAGAVETLKKIEKMGSEKGREKLRRILESLEEGQEEMDWEEFLDSSFSSPQCGLSD* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01306 523 SUPERFAMILY ARM repeat 228 498 IPR016024 -
Pte15g01306 523 SMART arm_5 414 457 IPR000225 GO:0005515
Pte15g01306 523 SMART arm_5 293 333 IPR000225 GO:0005515
Pte15g01306 523 SMART arm_5 251 292 IPR000225 GO:0005515
Pte15g01306 523 SMART arm_5 334 374 IPR000225 GO:0005515
Pte15g01306 523 SMART arm_5 375 413 IPR000225 GO:0005515
Pte15g01306 523 Pfam U-box domain 54 121 IPR003613 GO:0004842|GO:0016567
Pte15g01306 523 Pfam Armadillo/beta-catenin-like repeat 334 373 IPR000225 GO:0005515
Pte15g01306 523 PANTHER U BOX DOMAIN-CONTAINING 42 496 - -
Pte15g01306 523 ProSiteProfiles U-box domain profile. 52 126 IPR003613 GO:0004842|GO:0016567
Pte15g01306 523 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 345 387 IPR000225 GO:0005515
Pte15g01306 523 Gene3D - 223 499 IPR011989 -
Pte15g01306 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 124 IPR013083 -
Pte15g01306 523 SMART Ubox_2 56 119 IPR003613 GO:0004842|GO:0016567
Pte15g01306 523 SUPERFAMILY RING/U-box 49 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01306 Pte-Chr15 10133564 10135225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01306 48 521 U-box Gene Family AT5G40140 52.823 4.27e-159 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01306 - - qsa:O6P43_004571 620.157