Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01297 ATGAAGAGAACTCGGGATGATGCTTATGCTGCCTCTCAATTGAAGCGACCCCCTGGTTCCTCACGTGGGGATTCCTATGGCCAATCACAAGTTCCTGGAGGTGGGGGTGGGGGTGGAGGAGGGGGAGGCACAAGTGGAGGGGAAGCTACTTCACAAAAATTGACGACAGATGATGCTTTGACATATCTAAAGCAAGTGAAAGAAATGTTTCAGGATCAAAGAGAAAAATATGATATGTTTCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACGGACACTGCAGGTGTCATAGCGAGAGTGAAAGAATTGTTTAAAGGGCATAACAAATTGATTTATGGATTTAATACTTTCTTGCCAAAGGGGTATGAGATAACTCTTGATGAGGACGAGACTCCTCAGAAAAAGACTGTGGAGTTTGAAGAAGCTATTAGTTTTGTAAACAAGATAAAGAAACGATTCCAGAAAGATGAACATGTTTATAAATCATTTCTAGACATTTTAAATATGTATCGCAAGGAGCACAAGGATATCAGTGATGTCTATAGTGAGGTGGCTATACTTTTCGAGGACCATCCTGATTTGCTTGATGAGTTTACTAGGTTTCTTCCAGATACTTCCGCTTCACCTCCTGTACATCCTGTTTCTCATAGACATCCAATTCAACGTGTTAATGAGAGGAGCTCTGCAACACACGCAACACAGCAGATTACAGATAAGCAACGTATGCTTCGGGATAGGCTCTTGAATTCGGGTCATGATCTTGGAGTGGACCATCCTGAGTTGGACAATGATAAGATAACAATGAAGTTACACAAGGAACAGAGGAAGCATGTTGAAAAGGACAACAGAGATAGGAGGAATCATGATCTGGGTGGTAAAGATTGGGATAACGATGACAGTAGGGATTGTAATTTGCTGCGATTTGCAGAAAAAAAGAAGTACATCAGGAAATCGGAGGGTTATGGAGGAAATGCTGATTTAGCCTCTTCTGATGACAAAGACACCTTCACAAGTATGTACAGCCAGGCATTTAGTTTTTGCGAGAAAGTGAAAGAAAGGCTGGGTAGTTCGGATGATTATCAGGCATTCCTGAAATGCCTTCATATTTTTAGCAATGGAATAATTAAAAAGAATGATCTGCAAAATTTGGTAACTGATCTGCTTGGGAAGTTCACTGATCTAATGGAGGAATTTAATGATTTCTTGGACCGTTGTGAAAATATTGATGGGTTCCTTGCTGGCGTCATGAGTAAAAAATCATTTAGCGATGCCAATTCCTCCAAACCAGTGAAGTTGGAGGACAAAGAACAGAAGCGTGACATTGATGGAGCTAAAGAGAAAGAAAGATATAGAGAGAAGTATATGGCAAAATCTATCCAAGAGCTTGACCTCAGTAACTGCCAGCGTTGTACTCCCAGCTATCGCCTTCTTCCCGACGATTATCCAATCGCTCCCGCCACTCAGAGGTCTGAGTTGGGGGCTCTGGTTCTAAATGATCGCTGGGTATCTGTTACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGGAGAAATCAATATGAGGAAAGTTTGTTCAAATGTGAAGATGATAGATTTGAACTGGATATGCTTTTAGAGTCTGTAAGCTCAGCTGCTAAGCATGTGGAGGAATTATTGAATACCTTCAAAGAGAATAAGATCAATAAGGAGACTGCCTTTCGCATTGAAGATCATTTCACGGGTTTGTGGAAATCTTCACTAAACATAAGGTGCATTGAGCGTCTATATGGTGACCATGGTCTTGATGTCCTTGATATATTACGTAAAAACCCAACTCTCGCTTTACCTGTAATCTTGGCACGCCTCAATCAGAAACAAGAGGAATGGACCAAGTGCCGTCAAGATTTTAATAAGGTTTGGGCTGAAATATATGCTAAGAACCACTACAAATCTCTTGATCATCGCAGCTTCTATTTCAAGCAGCAAGATTCGAAGAACTTGAGCACCAAATCTATGGTTGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGACATTGTTCAGACTATTGCATCTGGTAACAAACATACTCTAGTTCCACATCTGGAATTTGAATTTTCCGATGTTGGCATCTATGAAGACCTGTATAAACTTATCCAATATTCATGTCAAGAGCTTTGCGCATCGAAAGAACAATTAAGTAAAGTTATGAGACTGTGGACCACTTTTATGGAGCCACTGTTGGGTGTTTCCCCTCGTCCTCATGGAAAAGAGACTAGAGAAGACAGAAAAGCTTGTAATGTCATGCACAGCACAGCGTTCAGTAGAGAGAAAGAAGATAGAAGTCCTGGTGTTGTCACTACAGCAGTTAATGGCAAGTATAAAAAATCTGCCAATAATGAAATGGAAAATAGAATGCTGGAAGCAGAGAGTATTTCACATAATAGTCATGACAATGGTGATAAAGAAAAAGGTTCTGCTTACAGCGATCACATCCGTGGAGATGATACAGTCTCTAGTAATTGCCATGCTGAGAAGGAGCAGGCAAATGTAAGTAATGATCCTATTCTTCCAGTGGACAACTTCCATGTGCCATTTGCGGGTAATGCTGAAAATATTCACACCAGAACAAGCTTGGAGATGACCGCAGGTTGTAGCTCCCAACTTCGTGATGCCGTTGGTGAGGACACTATTGTAACCAGGGGTCACAGTAATGCTATGCTTTTGTCAGAGGTTCATGATGGTTTCGCTGAAGCTGTTAAAGTTAGCAAACACCGTGAAGAATCTTCTGGGACTGGGACCTTTAAAACTGAAAAGGAGGAGGGAGAGTTATCACCAAATGGTGATTTTGGGGAGGATAATTTTGTTAGATATGGAGATGCTGACATGGCAATGCCCAAGTCAAGGCACAGTATTGGAAGAAGGCAATATGAACCTCGCCACGTGTTGGAAGAAGATGGCTGTCAGGATGCTAGAGGAGACAATGATGCAGATGCTGATGATGAGGATAGTGACAATGTATCAGAAGCTGGTGAAGATGTCTCTGTCAGTGAGTCGGCTGGTGATGAGTGTTCCCGGGAAGAGCATGAGGAGGAAGATGTAGAGCGAGATGAGGTTGACAGTAAGGCTGAGAGTGAAGGTGAGGCAAAGGGGATGTTTGATGCACCTCATGCTGCTGGATATGGGCAGTCTTTGCCTTTGTCAGAACAATTCCTATCATCTGTGAAGCCTCTTGCAAAGCATGTACCCCCAATGTTTTGTGGCGGGGAAAGGAGAAGCTGTAGGATTTTTTATGGAAATGATGATTTCTATGCGCTTTTCAGGCTTCATCAAACTCTTTATGAAAGGATCGCATCAGCAAAAATCAATTCGATGTCTGCTGAAATGAAACTGAAAACACCAAAGGGTGACAGTGGTCTAGATCCCTATTCCAGATTCATGGGTGCATTGTACAATCTGCTTGATGGATCTGTTGACAATGCTAAATATGAAGATGAATGCCGATCAATAATTGGAAATCAGTCATATGTGTTATTTACATTGGACAAGCTAATATATAAATTGGTGAAACAGCTTCAGGCTGTTTCATCTGATGACACCGACAGCAAGCTTCTTCAACTTTATGAGTACGAGAAGTCACGCAAACCTGGGAAGTTAATTGATTCAGTGTATTATGCTAATACACGTATCATCCTAAATGAGGAGAATATATATCGCTTTGAATGCTCCTGTAGTCCTCATAAACTCTCGATCCAGATGATGGACAACCAGAATGAAAAGTCAGAGATGTTTGCTGTTTCTATTGATCCTAATTTTACTCATTACTTGTACAATGATTTTCTGTCGGTATCTCCTGGCAAAAGGGAGCACCTTGGCATCGTACTGCAAAGAAATAAGCGCAAGTATGTTGGCCTGGATGAAGTGTCTGCCATGCTCTTGGCTATGGAAGGTGTTCAAGCAGTCAATGGACTGGAGTGTAAGATAGCTTGCAACTCATCCAAGATATCGTATGTTCTGGACACTGAAGATTTCTTCATTCGTTCGTGGAAAAAGAGGACATTATCATTAGCCAGCAGCAGCGTCTTGTCAATGCACCTCAAGATGGGCTAA 4104 0.4154 MKRTRDDAYAASQLKRPPGSSRGDSYGQSQVPGGGGGGGGGGGTSGGEATSQKLTTDDALTYLKQVKEMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNKLIYGFNTFLPKGYEITLDEDETPQKKTVEFEEAISFVNKIKKRFQKDEHVYKSFLDILNMYRKEHKDISDVYSEVAILFEDHPDLLDEFTRFLPDTSASPPVHPVSHRHPIQRVNERSSATHATQQITDKQRMLRDRLLNSGHDLGVDHPELDNDKITMKLHKEQRKHVEKDNRDRRNHDLGGKDWDNDDSRDCNLLRFAEKKKYIRKSEGYGGNADLASSDDKDTFTSMYSQAFSFCEKVKERLGSSDDYQAFLKCLHIFSNGIIKKNDLQNLVTDLLGKFTDLMEEFNDFLDRCENIDGFLAGVMSKKSFSDANSSKPVKLEDKEQKRDIDGAKEKERYREKYMAKSIQELDLSNCQRCTPSYRLLPDDYPIAPATQRSELGALVLNDRWVSVTSGSEDYSFKHMRRNQYEESLFKCEDDRFELDMLLESVSSAAKHVEELLNTFKENKINKETAFRIEDHFTGLWKSSLNIRCIERLYGDHGLDVLDILRKNPTLALPVILARLNQKQEEWTKCRQDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSMVAEIKEIKEKQQKEDDIVQTIASGNKHTLVPHLEFEFSDVGIYEDLYKLIQYSCQELCASKEQLSKVMRLWTTFMEPLLGVSPRPHGKETREDRKACNVMHSTAFSREKEDRSPGVVTTAVNGKYKKSANNEMENRMLEAESISHNSHDNGDKEKGSAYSDHIRGDDTVSSNCHAEKEQANVSNDPILPVDNFHVPFAGNAENIHTRTSLEMTAGCSSQLRDAVGEDTIVTRGHSNAMLLSEVHDGFAEAVKVSKHREESSGTGTFKTEKEEGELSPNGDFGEDNFVRYGDADMAMPKSRHSIGRRQYEPRHVLEEDGCQDARGDNDADADDEDSDNVSEAGEDVSVSESAGDECSREEHEEEDVERDEVDSKAESEGEAKGMFDAPHAAGYGQSLPLSEQFLSSVKPLAKHVPPMFCGGERRSCRIFYGNDDFYALFRLHQTLYERIASAKINSMSAEMKLKTPKGDSGLDPYSRFMGALYNLLDGSVDNAKYEDECRSIIGNQSYVLFTLDKLIYKLVKQLQAVSSDDTDSKLLQLYEYEKSRKPGKLIDSVYYANTRIILNEENIYRFECSCSPHKLSIQMMDNQNEKSEMFAVSIDPNFTHYLYNDFLSVSPGKREHLGIVLQRNKRKYVGLDEVSAMLLAMEGVQAVNGLECKIACNSSKISYVLDTEDFFIRSWKKRTLSLASSSVLSMHLKMG* 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01297 1367 MobiDBLite consensus disorder prediction 422 445 - -
Pte15g01297 1367 ProSiteProfiles PAH domain profile. 136 206 IPR003822 GO:0006355
Pte15g01297 1367 MobiDBLite consensus disorder prediction 961 992 - -
Pte15g01297 1367 MobiDBLite consensus disorder prediction 429 445 - -
Pte15g01297 1367 MobiDBLite consensus disorder prediction 273 295 - -
Pte15g01297 1367 PANTHER SIN3B-RELATED 52 1239 IPR039774 GO:0003714
Pte15g01297 1367 SUPERFAMILY PAH2 domain 50 121 IPR036600 GO:0006355
Pte15g01297 1367 ProSiteProfiles PAH domain profile. 337 406 IPR003822 GO:0006355
Pte15g01297 1367 Pfam C-terminal domain of Sin3a protein 1095 1343 IPR031693 -
Pte15g01297 1367 MobiDBLite consensus disorder prediction 1023 1037 - -
Pte15g01297 1367 FunFam Paired amphipathic helix protein SIN3 335 408 - -
Pte15g01297 1367 SUPERFAMILY PAH2 domain 132 205 IPR036600 GO:0006355
Pte15g01297 1367 SMART hdac_interact2seq4b 467 567 IPR013194 -
Pte15g01297 1367 Gene3D Paired amphipathic helix 134 207 IPR036600 GO:0006355
Pte15g01297 1367 Pfam Paired amphipathic helix repeat 159 203 IPR003822 GO:0006355
Pte15g01297 1367 Pfam Paired amphipathic helix repeat 75 119 IPR003822 GO:0006355
Pte15g01297 1367 Pfam Paired amphipathic helix repeat 359 403 IPR003822 GO:0006355
Pte15g01297 1367 Gene3D Paired amphipathic helix 58 120 IPR036600 GO:0006355
Pte15g01297 1367 MobiDBLite consensus disorder prediction 921 944 - -
Pte15g01297 1367 SUPERFAMILY PAH2 domain 341 406 IPR036600 GO:0006355
Pte15g01297 1367 MobiDBLite consensus disorder prediction 810 836 - -
Pte15g01297 1367 Pfam Sin3 family co-repressor 469 561 IPR013194 -
Pte15g01297 1367 Gene3D Paired amphipathic helix 336 408 IPR036600 GO:0006355
Pte15g01297 1367 MobiDBLite consensus disorder prediction 1 51 - -
Pte15g01297 1367 MobiDBLite consensus disorder prediction 993 1007 - -
Pte15g01297 1367 MobiDBLite consensus disorder prediction 921 1046 - -
Pte15g01297 1367 FunFam Paired amphipathic helix protein Sin3 58 120 - -
Pte15g01297 1367 ProSiteProfiles PAH domain profile. 52 122 IPR003822 GO:0006355
Pte15g01297 1367 FunFam Paired amphipathic helix SIN3-like protein 135 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01297 Pte-Chr15 10069434 10080008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01297 41 155 WRKY Transcription Factor Family AT4G12020 50.000 6.18e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte15g01297 Sin3a_C 1.6e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01297 K11644 - cave:132181355 1677.92