Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01286 ATGGCTATGGGAAGAAATAGGATTAAGTTATCATTCCTTCTTGTGGCTTTTGCCATTGCAGTTCCATGTCTAAATGCAGGCATTGCTGAAGAGGATAATTATACGAAGCAGCTAGAAGACCAAGCCCGTCAAGCTGCTGAGAATGCTTATACACCTGACCCTGAAAGTATTGCCCAAGAATTGTATAAGCAAACTAGAAGGTCGGACTTGGACTCGACCAACAGCACAAGGAGGAGCTTGGGTAAGAAATACACTGGACCATGCAAGGTTACCAACCCAATCGACAAATGCTGGCGTTGCGATCCAAACTGGGCAAAGGACAGGAAGAAGTTGGCCAAATGTGCTATGGGGTTTGGCCGGAAGACCACCGGAGGACTCAAGGGGCAGTACTACTTGGTCACTGACAGCTCAGATAATGACTTGGTGAACCCAAAACCAGGAACTTTCCGCCATGCTGTGGTGCAGAATAGACCTCTGTGGATCATCTTCTCCAAGAGCATGGTCATCACTTTGCAGAAAGAGTTGATGATTACTTCAAATAAGACCATTGATGGTCGAGGTCACAATGTTCAATTCACCGGAGGTGCTGGGCTTACAGTCTTTTTAAGTAGCAATGTGATTATTCATAATGTGAAAATCTACAACATTGTTGCAAAAGACGGTGGTATTATTAGGGACTCTGAAACTCATTATGGAGTCAGGACACCTAGTGACGGAGATGGTATCAGTATCTTTGGTGGTTCGAACGTTTGGATCGATCATATATCCATGTCTAATTGCGCAGATGGGCTCATTGATGCAATTCGTGGTTCCACAGCCATCACCATCTCCAATTGCCACTTCACAGATCACGACCACGTGATGCTTTTTGGAGCCAGTGATACATACAACATAGACAAGCTCATGCAAGTGACCGTAGCATTCAACCATTTTGGAAAGGGTCTGGTACAGAGAATGCCTAGATGTAGATTTGGATTCTTCCATGTTGTGAACAATGATTACACACACTGGCTCATGTATGCCATTGGTGGTAGTGCTAACGCAACCATTATCAGCCAAGGCAATCGTTTCATTGCCCCCCCTAATGACGCAGCCAAAGAGATAGCACATAGGATCAATGCTAAAGAAGAAGTATGGAAGAAGTGGCAATGGAGATCAGAGAATGACCTATTGATGAATAATGCAACCTTCCTTCAATCCGGACCACCACTTAGACATGAGCAGGTGACCGGCGAAAACATGATCGCTGCCAAACACGGAAACGACGTCACATGGATCACAAGGTTCTCAGGCGTGCTTAACTGCGTCGAAGGGAAGCCTTGCTAA 1326 0.454 MAMGRNRIKLSFLLVAFAIAVPCLNAGIAEEDNYTKQLEDQARQAAENAYTPDPESIAQELYKQTRRSDLDSTNSTRRSLGKKYTGPCKVTNPIDKCWRCDPNWAKDRKKLAKCAMGFGRKTTGGLKGQYYLVTDSSDNDLVNPKPGTFRHAVVQNRPLWIIFSKSMVITLQKELMITSNKTIDGRGHNVQFTGGAGLTVFLSSNVIIHNVKIYNIVAKDGGIIRDSETHYGVRTPSDGDGISIFGGSNVWIDHISMSNCADGLIDAIRGSTAITISNCHFTDHDHVMLFGASDTYNIDKLMQVTVAFNHFGKGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSANATIISQGNRFIAPPNDAAKEIAHRINAKEEVWKKWQWRSENDLLMNNATFLQSGPPLRHEQVTGENMIAAKHGNDVTWITRFSGVLNCVEGKPC* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01286 441 Pfam Pectate lyase, N terminus 28 80 IPR007524 GO:0030570
Pte15g01286 441 SMART amb_all 166 363 IPR002022 -
Pte15g01286 441 Pfam Pectate lyase 174 357 IPR002022 -
Pte15g01286 441 Gene3D - 91 434 IPR012334 -
Pte15g01286 441 SUPERFAMILY Pectin lyase-like 92 432 IPR011050 -
Pte15g01286 441 PANTHER PECTATE LYASE 18-RELATED 42 439 IPR045032 GO:0030570
Pte15g01286 441 MobiDBLite consensus disorder prediction 64 83 - -
Pte15g01286 441 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Pte15g01286 441 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Pte15g01286 441 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Pte15g01286 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Pte15g01286 441 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Pte15g01286 441 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Pte15g01286 441 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Pte15g01286 441 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01286 Pte-Chr15 9964556 9966188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01286 8 442 Polysaccharide Lyase AT5G15110 52.553 6.52e-169 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01286 K01728 - csv:101202789 572.778