Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01272 ATGGGAAGGCCACCTTGTTGTGATAAATCAAATGTCAAGAGGGGACTATGGACTGCTGAAGAGGATGCAAAAATTTTGGCTTATGTTTCCAATCATGGTATTGGAAACTGGACTCTGGTTCCAAAGATAGCGGGGCTCAATAGATGTGGCAAGAGCTGCAGGCTAAGATGGACTAACTACCTCAGACCTGATCTCAAGCATGATAGTTTCACTCAACAAGAAGAAGAGCTTATTATAAGCCTTCACAAAGCTATAGGCAGCAGGTGGTCTCTTATTGCAAAGCAACTGCCTGGAAGAACAGACAACGATGTTAAGAATTACTGGAACACAAAACTTAGGAAGAAGCTTATCAAGATGCAAATTGACCCAGTAACTCATAAACCTTTTCCTCAGGTCCTTTCTGATTATGGCAACATCAGTGGCCTCTCTCCTGGCAAACATACTGGGCCTATCAATAAGACCTTAGGAAACAAATTCACAGCCCAAACAACTTCATTTGCTGGCCACAATAGATTTTCAAACGCCAGCATAAACAGTAGTGTGACATTAGAGCAGTACCAAGAAAATTGTTTCAATGATGGCATGAAACTTTTGCAATATCCGTCCCAGTTCCAAGTGATTAACAACGATTTCGTCCAGTCTCACTTCCTCAATGAAGCTACATCCTCCTGTTCTTCTTCATCCTCTAATCTCAGACAGCTAAATTCACCTCAATCGTATTCTAACCCACCACCCCAGGAACAGCTAAATCCTTCTTTTAATTGGAGTGAGTTTCTTCTCGGCGATCCACTTATGTCCACAGAGCCTCAACAGCTGGAAATGCATGAGTTACAGGGAGTTTTATCTTCATATAACCATTCTAATCAAATGCAAAATGAGGTTTGTCTGCCCAGGATCTGCAATGGAGAAATTTACAACATGAATGGAGTTGCCAATATGGAATCTGGGGCCACTTGGCATTCTACTCCCTGTGAAGGCTTAAATAGCAAGCAATCTGAAGGTCCACCATCTTCACTTGATTCATTTGTGGATGCAATATTGAATAGGGACAGTGAGATGACAGCAACATTTCCTGAACTTTTTGATGAATCTTTTGATTTCTGA 1104 0.4149 MGRPPCCDKSNVKRGLWTAEEDAKILAYVSNHGIGNWTLVPKIAGLNRCGKSCRLRWTNYLRPDLKHDSFTQQEEELIISLHKAIGSRWSLIAKQLPGRTDNDVKNYWNTKLRKKLIKMQIDPVTHKPFPQVLSDYGNISGLSPGKHTGPINKTLGNKFTAQTTSFAGHNRFSNASINSSVTLEQYQENCFNDGMKLLQYPSQFQVINNDFVQSHFLNEATSSCSSSSSNLRQLNSPQSYSNPPPQEQLNPSFNWSEFLLGDPLMSTEPQQLEMHELQGVLSSYNHSNQMQNEVCLPRICNGEIYNMNGVANMESGATWHSTPCEGLNSKQSEGPPSSLDSFVDAILNRDSEMTATFPELFDESFDF* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01272 367 MobiDBLite consensus disorder prediction 225 248 - -
Pte15g01272 367 CDD SANT 69 112 IPR001005 -
Pte15g01272 367 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Pte15g01272 367 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte15g01272 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pte15g01272 367 Gene3D - 68 128 - -
Pte15g01272 367 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte15g01272 367 FunFam Transcription factor RAX3 7 67 - -
Pte15g01272 367 CDD SANT 17 61 IPR001005 -
Pte15g01272 367 Gene3D - 7 67 - -
Pte15g01272 367 FunFam transcription factor MYB80 69 129 - -
Pte15g01272 367 PANTHER F14D16.11-RELATED 1 366 - -
Pte15g01272 367 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte15g01272 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pte15g01272 367 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte15g01272 367 SMART sant 13 63 IPR001005 -
Pte15g01272 367 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01272 Pte-Chr15 9749739 9751436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01272 1 368 MYB Transcription Factor Family AT3G28470 47.027 3.73e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte15g01272 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01272 K09422 - qsa:O6P43_004543 412.535