Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01266 ATGGACATAGTAACCACGGCCGATGCTAATTCACCAGAACCTGACAGTGAAACCCCAACGCGGATCCAACCCAGCAAGCCTTTTCCTTCCTCCAACGGCTTGCTCAAACGCCATCACCCTCACCACAACCACCTTTCCAGCCAGCAATCTCTTCCCGTAATCTACAAAGAATGCTTAAAGAACCATGCAGCCAGCTTGGGCGGTCTCGCGGTTGATGGTTGTGGAGAGTTCATGCCTTCACCTTCTGCCACTTCCACTGACCCAACTTCACTAAAATGTGCTGCTTGTGGTTGCCACAGGAATTTCCACCGCCGTGAACCAGAGGATCAGCCAATTCCGGCAACCCATGTCTTAGAATACCAGCCCCATCATAGACATCACCCACCACCTCCTCACCAACCGCTTCAAGCTCGAAGTCCCAATTCAGCTTCCCCACCACCGCTCTCATCGTCTTATTTTCCATCTGCTCCCCATATGCTTTTAGCTCTCTCCTCTGGTCTATCATCTCCTCCAGAAAACATAGCCCCACATGTACATAGTATGGTCTCGCCCAGTTCACTTACCCGGAAGCGATTCAGGACTAAATTCAGTCAAGATCAGAAAGATAAAATGTATCAGTTTGCTGAAAAAGTAGGGTGGAAGATACAGAAGGTAGACGATAAATTGATTCAGGAGTTCTGCAATGAAGTTGGGGTTGACAGAGGGGTTTTCAAGGTCTGGATGCACAACAATAAAAACACTCTCGGGAAAAAAGATGATCACGGGAGCAGGAAAAATCTTGAGGAGCCTGAGCAAATTACTCAGAATAATGGGACCCATGGACGACGATAG 831 0.4838 MDIVTTADANSPEPDSETPTRIQPSKPFPSSNGLLKRHHPHHNHLSSQQSLPVIYKECLKNHAASLGGLAVDGCGEFMPSPSATSTDPTSLKCAACGCHRNFHRREPEDQPIPATHVLEYQPHHRHHPPPPHQPLQARSPNSASPPPLSSSYFPSAPHMLLALSSGLSSPPENIAPHVHSMVSPSSLTRKRFRTKFSQDQKDKMYQFAEKVGWKIQKVDDKLIQEFCNEVGVDRGVFKVWMHNNKNTLGKKDDHGSRKNLEEPEQITQNNGTHGRR* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01266 276 Pfam ZF-HD protein dimerisation region 53 107 IPR006456 -
Pte15g01266 276 MobiDBLite consensus disorder prediction 262 276 - -
Pte15g01266 276 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 106 IPR006456 -
Pte15g01266 276 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 248 - -
Pte15g01266 276 MobiDBLite consensus disorder prediction 245 276 - -
Pte15g01266 276 MobiDBLite consensus disorder prediction 245 261 - -
Pte15g01266 276 SUPERFAMILY Homeodomain-like 178 250 IPR009057 -
Pte15g01266 276 FunFam Zinc-finger homeodomain protein 2 177 250 - -
Pte15g01266 276 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 106 IPR006456 -
Pte15g01266 276 MobiDBLite consensus disorder prediction 1 48 - -
Pte15g01266 276 MobiDBLite consensus disorder prediction 121 151 - -
Pte15g01266 276 NCBIfam homeobox domain, ZF-HD class 189 246 IPR006455 -
Pte15g01266 276 MobiDBLite consensus disorder prediction 1 30 - -
Pte15g01266 276 Gene3D - 178 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01266 Pte-Chr15 9697901 9699882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01266 1 245 ZF-HD Transcription Factor Family AT5G15210 50.593 1.13e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte15g01266 ZF-HD_dimer 4.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01266 - - qsa:O6P43_009085 340.887