Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01259 ATGCTGATGCCGTTACTTATGAGTCTCGCTTCTCGAAGGCAAATCCAGCAGCAGGAATCGCCGTCAGACGCCGATCACGGGGTTGGATTTCGGATCTTGATGGTTCATAGCCGTACATGCCTCGTGCTTTGGGTGGAGGGAACTGGAGATATCGACTCTTTGTTTGAGCATTTATCTAGTAAGTCTGGGGTGTCGCTTGCGTCCAAAGCATCGATCGAGGCCATGCCTAGGGTTGTGATGAACGATATAGACGCAGAGTGCGCTATCTGCTTGGATACGTACGAAGACGTTGGGGGCGAAGCTCGAGAGATGCCTTGCATGCACAGGTTTCATTCTGCTTGTATAGAGAAGTGGCTGGGGATTCGTGGATCGTGTCCTGTTTGCCGGTTTCAAATGCCGGCGGTGGAGAAAAGAGAGAACAGCAGTGAAGTAGAGAATGGAGGTGGAGAAGAGGGTGGTCACAGGAGACAGCCTGCCTTTACCTTAAGAATGTGGATGCGAACACGGAGCTCCGGACGGAGTCCTCCAATGAACGCGGATTTGGGTTCGGTCAGCGAGTCTGGGGAAGGCTCCACGGCCACAACACCGTCAACGCATTACATTTAA 606 0.5248 MLMPLLMSLASRRQIQQQESPSDADHGVGFRILMVHSRTCLVLWVEGTGDIDSLFEHLSSKSGVSLASKASIEAMPRVVMNDIDAECAICLDTYEDVGGEAREMPCMHRFHSACIEKWLGIRGSCPVCRFQMPAVEKRENSSEVENGGGEEGGHRRQPAFTLRMWMRTRSSGRSPPMNADLGSVSESGEGSTATTPSTHYI* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01259 201 SMART ring_2 87 128 IPR001841 -
Pte15g01259 201 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Pte15g01259 201 MobiDBLite consensus disorder prediction 136 152 - -
Pte15g01259 201 MobiDBLite consensus disorder prediction 167 201 - -
Pte15g01259 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 53 133 - -
Pte15g01259 201 MobiDBLite consensus disorder prediction 136 201 - -
Pte15g01259 201 Pfam Ring finger domain 86 129 IPR001841 -
Pte15g01259 201 SMART ringv_2 86 129 IPR011016 GO:0008270
Pte15g01259 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 135 IPR013083 -
Pte15g01259 201 SUPERFAMILY RING/U-box 81 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01259 Pte-Chr15 9666837 9667442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01259 1 144 C3H Transcription Factor Family AT1G26800 38.312 1.22e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01259 - - qsa:O6P43_004477 137.117