Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01245 ATGGCCAGAAAGAGAAAGAGTGTTGAAGCACGAGATCAGAAGAATTCAAATGAAGGAACCATGGATTGGGATGAGATGGTGAAGGAGGCTGCTGCTGCTGGTGCTGGTGCAACTCGGAGAGCCCAGAAGCGATTTGTCGGTGTCCGGCAGCGGCCATCAGGTAAATGGGTGGCAGAGATAAAGGACACCATACAAAAGATAAGGGTGTGGTTAGGCACCTTTGACACAGCTGAAGCAGCAGCTAGAGCTTATGATGAAGCTGCTTGCTTGCTGCGTGGAAACAATACCAGAACAAACTTCTGGCCTTGTCCTTCATCTTCATCAGCACCAGCTCTTCCTACAAAGATTACTAATCTTCTCCTGCAACGGCTTAAAGCCAAGAACAACACCTGTTCTCCTTCTCCTTCTCCTTCTTCTTCCGCTTCTCTTTCCCTTGATCAAAAACATGAGCAACAAGTAACAGATGGATACAGAAAAGCAGCAAGAAAAGCAATTGAGCGATTTCCTCAAACCCAATTGAGTGATTTCCTTCATGATGCCGAAGATTATAGTGCTAGCTACAAAGGCAATCTTCAGTCTTGTTTTTCTCAGACTAATGAATATGGCGTATTAGAAGGTCTGAATCTGGAATACTTCAGCAGCGGAGGACATACTTCAAGCACGAATGAAAGTTCCGAAGGGGAAGGAAAGGAAGATATTGAAGGTGAAAGCACTGATGAGGTGAGTGGATTGGATTTTCAATTTTTGGATGATATCGGTCCATCATGTTACTACTCCCCTTTTGAGATGGCACAAGAGTTTGAAGAGCCTGTTGAGCAAGAGAACTATGAGGACGAATCCGCCATGCTAAGAGCAGCCATGAAAAGGATGAAGTATGAAAGGAAATTTTCAGCTTCTCTCTATGCCTTCAATGGGATACCTGAATGCTTGAAGGTGAAACTTGAGTCGATAGATGCAACTAATATGATCAATGGCGAGGAAAGTCAGGGAGGTGCTGTGATCACTGGAACAATTAAGAAGAAAAAAGAGGAAAGCCTAGCAACTTCAACTGACATGAAGTCTTCTACTTCTTCAAGCATTGAGGCTGACTTGTCCATATGGAATTCATTGGATCCCATATGCTTCGTTAATTAA 1134 0.4374 MARKRKSVEARDQKNSNEGTMDWDEMVKEAAAAGAGATRRAQKRFVGVRQRPSGKWVAEIKDTIQKIRVWLGTFDTAEAAARAYDEAACLLRGNNTRTNFWPCPSSSSAPALPTKITNLLLQRLKAKNNTCSPSPSPSSSASLSLDQKHEQQVTDGYRKAARKAIERFPQTQLSDFLHDAEDYSASYKGNLQSCFSQTNEYGVLEGLNLEYFSSGGHTSSTNESSEGEGKEDIEGESTDEVSGLDFQFLDDIGPSCYYSPFEMAQEFEEPVEQENYEDESAMLRAAMKRMKYERKFSASLYAFNGIPECLKVKLESIDATNMINGEESQGGAVITGTIKKKKEESLATSTDMKSSTSSSIEADLSIWNSLDPICFVN* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01245 377 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Pte15g01245 377 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Pte15g01245 377 MobiDBLite consensus disorder prediction 128 153 - -
Pte15g01245 377 FunFam ethylene-responsive transcription factor RAP2-11 43 102 - -
Pte15g01245 377 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 308 - -
Pte15g01245 377 MobiDBLite consensus disorder prediction 1 24 - -
Pte15g01245 377 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Pte15g01245 377 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Pte15g01245 377 CDD AP2 43 100 IPR001471 GO:0003700|GO:0006355
Pte15g01245 377 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Pte15g01245 377 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Pte15g01245 377 MobiDBLite consensus disorder prediction 214 239 - -
Pte15g01245 377 MobiDBLite consensus disorder prediction 128 150 - -
Pte15g01245 377 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01245 Pte-Chr15 9598776 9599909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01245 44 120 AP2-EREBP Transcription Factor Family AT5G19790 75.641 1.08e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte15g01245 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01245 K09286 - qsa:O6P43_004449 362.459