Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01228 ATGACCGATCCCTACTACAATTATTCCTATTCCTCTGGTTGGCTTAACTCTAATCCAGTGTTCCAATTTCCTTCTGATCATTACGACTTCACAAATTGCACCGACAAAGACTCTCTTGCTTGTTGCCAGTTTTCCTCTCCATTTTATTATCTGAAAGAAACCCTCCCTCTACTCAATCTGAGCCCAAAAAAAGAAGATCTTGAATCTCCAACTAGTGCAATGGAAGTAGAAAACAATAAGGACAAAGAATCGTTCTCCTTATCTGGCTATGCTTATGGGGATGATGGTGATACTGTTTCAGTGGCTTTACGTCTAGGGTTAGCATCTTCATCAAGTTCAGCTGATTTAATTTCAAGCGTCTCCTCCACAGAAATCTCATCGGACAAGGAAGAAGCTACTTTAGCTTCCTCAAACAGCTCAAACAGGATTCACAAGGGTCAGTATTGGATCCCCACCCCCACTCAGATTCTGATTGGTCCGACACAGTTCTCATGTCCTCTTTGCTTCAAGACCTTTAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCTCAGTACAGGAAAGGGCCAGAGTCTCTGAGAGGAACTCAACCAACGGCAATGCTTAGACTGCCTTGCTATTGCTGTGCGCCTGGATGCAGCAATAACATAGACCACCCAAGGTCCAAACCACTCAAAGACTTCAGAACCCTTCAAACCCATTACAAGAGGAAGCATGGAACCAAACCTTTCGTTTGCAGAAAATGTTGCAAGGCATTTGCTGTGAGAGGTGATTGGAGAACACATGAAAAGAATTGTGGGAAGTTCTGGTATTGCACATGTGGATCCGATTTCAGACATAAAAGGTCTCTTAAAGATCATATCAAAGCATTTGGAAATGGTCATGCAGCTTACAGTGTTGACAGTTTTCTAGAGGAAGAAGAAGCAGGCTCTGAAGATGAGCAAGATGGTGAAACCTAA 969 0.4303 MTDPYYNYSYSSGWLNSNPVFQFPSDHYDFTNCTDKDSLACCQFSSPFYYLKETLPLLNLSPKKEDLESPTSAMEVENNKDKESFSLSGYAYGDDGDTVSVALRLGLASSSSSADLISSVSSTEISSDKEEATLASSNSSNRIHKGQYWIPTPTQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCSNNIDHPRSKPLKDFRTLQTHYKRKHGTKPFVCRKCCKAFAVRGDWRTHEKNCGKFWYCTCGSDFRHKRSLKDHIKAFGNGHAAYSVDSFLEEEEAGSEDEQDGET* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01228 322 Gene3D Classic Zinc Finger 162 185 - -
Pte15g01228 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Pte15g01228 322 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Pte15g01228 322 Gene3D Classic Zinc Finger 222 301 - -
Pte15g01228 322 FunFam Zinc finger protein WIP2 216 298 - -
Pte15g01228 322 PANTHER ZINC FINGER PROTEIN WIP2 43 316 IPR043584 GO:0003700|GO:0010468
Pte15g01228 322 SUPERFAMILY beta-beta-alpha zinc fingers 228 267 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01228 Pte-Chr15 9421403 9423973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01228 1 318 C2H2 Transcription Factor Family AT3G57670 51.842 1.37e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g01228 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01228 - - qsa:O6P43_000130 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01228 15 9421403 9423973 Pte15g01228 15 9421403 9423973 RCT
Pte18g01428 18 26017573 26020063 Pte15g01228 15 9421403 9423973 RCT
Pte15g00627 15 4593748 4596329 Pte15g01228 15 9421403 9423973 RCT
Pte15g01449 15 11581923 11584425 Pte15g01228 15 9421403 9423973 RCT