Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01225 ATGAGTTGGAACCCTCATATGGAGGTTCATTACATTAACACCAGTTGTCCTTATAACACTGCTGGAAGCTTTATGGAATACTTTGAAGGCCTTACGTATGAGCATGTGAATTTCATATTCTCTGGTGCTTCACATGTTCAGGAGAGTGTATACCCATCAACCTCTGCTGGTGTTTACAAATTTGGGTCATCTGAACCAGTGACTTCGCCTTATTATGACCATAATTATGACTATGAGCTAACTAATGAAATGCGACTTGATGAATATAGAAGGCCTTCAGAGAATTCATCAGCATTAATTGGTGAACAGAGTGTAAGTTCTGGATGGGAAGGTGCTCCAAATACAACGACAAGAGATAGTTCCATTGAATGCCCTCGGAGACATAACAATTCTCGTGATTATCAGGTCATTTGGCAAGATAACATCGACCCTGACGATATGACTTATGAGGAATTGCTGGAGTTAGGTGAGACTGTTGGAACGCAAAGCCGCGGCCTCTCTCAAGAACTTATCTCATTGCTTCCAATCTCGAAGTATAAGTGTGGAATATTCTCAAGGAAAAGATCACGGAATGAAAGATGTGTGATTTGCCAGATGGAGTATAAACGTGGTGACAGGCGGATCACTCTCCCTTGCAAACATGTCTACCATACTAGTTGCGGTAGCAAATGGCTTAGCATCAATAAGGCTTGCCCTATCTGTTACACCGAGGTGTTCGCTGACATAACGAAACGTAATAGTCGTGGATCGTCATCACATTGA 762 0.4213 MSWNPHMEVHYINTSCPYNTAGSFMEYFEGLTYEHVNFIFSGASHVQESVYPSTSAGVYKFGSSEPVTSPYYDHNYDYELTNEMRLDEYRRPSENSSALIGEQSVSSGWEGAPNTTTRDSSIECPRRHNNSRDYQVIWQDNIDPDDMTYEELLELGETVGTQSRGLSQELISLLPISKYKCGIFSRKRSRNERCVICQMEYKRGDRRITLPCKHVYHTSCGSKWLSINKACPICYTEVFADITKRNSRGSSSH* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01225 253 MobiDBLite consensus disorder prediction 96 120 - -
Pte15g01225 253 FunFam E3 ubiquitin ligase BIG BROTHER 156 239 - -
Pte15g01225 253 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 239 IPR033276 GO:0004842|GO:0016567|GO:0046621
Pte15g01225 253 MobiDBLite consensus disorder prediction 91 127 - -
Pte15g01225 253 Pfam Ring finger domain 193 234 IPR001841 -
Pte15g01225 253 SUPERFAMILY RING/U-box 193 241 - -
Pte15g01225 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 240 IPR013083 -
Pte15g01225 253 SMART ring_2 194 234 IPR001841 -
Pte15g01225 253 ProSiteProfiles Zinc finger RING-type profile. 194 234 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01225 Pte-Chr15 9355907 9358513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01225 5 241 C3H Transcription Factor Family AT3G63530 44.269 1.32e-62 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01225 K19045 - cave:132164722 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01225 15 9355907 9358513 Pte15g01225 15 9355907 9358513 RCT