LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte15g01215	ATGGCGACTAAAACGGTGGATCCGGCTCCGGCAACCCAGAACCCGTCCCAACCGGCAAAGATCAGGTGGGGGGAGCTCGACGAAGATGATGGGGAGGATCTTGATTTTCTGCTGCCTCCAAAGCAAGTGATAGGTCCAGATGAGAATGGGATTAAGAAGGTGATTGAGTACAAGTTCAATGACGAAGGAAACAAGGTTAAGATCACCACTACCACACGTACTCGTAAACTCGCGAATGCTCGCTTGAGCAAGCGAGCTGTGGAGAGGCGGTCCTGGCCTAAGTTTGGTGATGCTGTACATGAAGATGTTGGTAGTCGCCTCACCATGGTCTCCACGGAAGAGATCGTCCTCGAGCGACCTCGGGCTCCTGGTAGCAAACCAGAAGAGGCCAAGGTTCAGTCAGATTCCTTGGCACAAATGGGGAAAGGTGCTGTTCTTATGGTTTGCAGAACATGTGGTAAGAAGGGTGACCACTGGACTTCAAGGTGCCCTTACAAGGATCTCGCCCAACCCATTGAGTCCTTCATGGATAAGCCTGCTACAGCAGAAACTGCTGCTGCAGGTGCAACTAAGGGTGCATATGTTCCTCCTGGCATGAGAGGTGGTGGTGCTGAGAGGACTGGATCTGAAATGCGCCGTAGGAATGATGAAAATTCAGTGCGTGTCACCAATCTATCAGAGGACACCCGAGAGCCTGATCTGCTAGAACTTTTCCGGCCTTTCGGTGCTGTAAGCAGAGTGTATGTTGCTGTGGATCAGAAGACTGGCATGAGCAGAGGATTTGGCTTTGTTAACTTTGTGAATAGGGAGGATGCTCAAAGAGCTATCAACAAACTCAATGGATATGGTTATGACAATCTCATCCTGAGAGTTGAGTGGGCCACCCCTAGGACAAATTAG	900	0.5044	MATKTVDPAPATQNPSQPAKIRWGELDEDDGEDLDFLLPPKQVIGPDENGIKKVIEYKFNDEGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEIVLERPRAPGSKPEEAKVQSDSLAQMGKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPIESFMDKPATAETAAAGATKGAYVPPGMRGGGAERTGSEMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRTN*	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte15g01215	299	FunFam	Eukaryotic translation initiation factor 3 subunit G	182	299	-	-
	Pte15g01215	299	PIRSF	Transl_init_eIF-3_RNA-bind	12	299	IPR017334	GO:0003743\|GO:0005737\|GO:0005852
	Pte15g01215	299	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	218	296	IPR000504	GO:0003723
	Pte15g01215	299	MobiDBLite	consensus disorder prediction	187	217	-	-
	Pte15g01215	299	CDD	eIF3G	49	167	IPR024675	-
	Pte15g01215	299	SMART	rrm1_1	219	292	IPR000504	GO:0003723
	Pte15g01215	299	Gene3D	-	182	299	IPR012677	-
	Pte15g01215	299	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	30	295	-	-
	Pte15g01215	299	MobiDBLite	consensus disorder prediction	1	19	-	-
	Pte15g01215	299	MobiDBLite	consensus disorder prediction	1	21	-	-
	Pte15g01215	299	SUPERFAMILY	RNA-binding domain, RBD	216	298	IPR035979	GO:0003676
	Pte15g01215	299	Hamap	Eukaryotic translation initiation factor 3 subunit G [EIF3G].	20	298	IPR017334	GO:0003743\|GO:0005737\|GO:0005852
	Pte15g01215	299	Pfam	Eukaryotic translation initiation factor 3 subunit G	42	168	IPR024675	-
	Pte15g01215	299	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	220	286	IPR000504	GO:0003723
	Pte15g01215	299	CDD	RRM_eIF3G_like	219	294	IPR034240	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte15g01215	Pte-Chr15	9278488	9280511	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte15g01215	19	297	Eukaryotic Initiation Factors Gene Family	AT3G11400	70.607	3.71e-156	437

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte15g01215	K03248		-	qsa:O6P43_028180	501.901