Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01210 ATGAACTCAGATTTTTCATCGACAACTATGGGGTCTTACTGGTGTTACAGATGTTCTCGCGTCATTCGTGCGTGGGTCAATCCGGACGAACCCGCTTGCCCATATTGCGTCAGTGGTTTCATCGAAGAGATGGAGATCAGCCCATCATCGGTAACGCATCGCAGTCCATTTCCAGCTCACACAACTCCTATGCTCGGCGATGGAGCTCACGATTTATACAGTAATAATATAAGGAGGCAGAGTGCGAGGAGACGGCGACGACACGCTGTGGACCACTCTCCATTTAACCCGGTCATTGTTTTCAGGGGGCCCGTTGATCTCGGCGGTGCGGAGAACGGTGAAGAAGGTGAGAATAGTAGCTTTGATTTGTATTATGACGATGGTGATGGCACTGGGCTCCGACCACTTCCGGCTCCGGTATCTGAGTTCTTGATGGGATCTGGTTTCGATCGCTTGCTGGAGCAGCTCTCCCAGATCGAGATAAATGGGTTGGGAAGGGCGGAGAATCCGCCGGCGTCTAAAGCGGCTATAGAGTCCATGCCCACGATTCAGATCGCCGAGACTCATGTGGGTTCGGAATCACACTGTGCCGTATGTACTGAAGCGTTCGAACTAGGCTCCGAGGCTCGTGAAATGCCTTGCAAGCATATCTACCACTCCGATTGCATTCTCCCATGGCTGTCTTTGCGGAACTCTTGCCCTGTTTGCCGCCATGAATTACCTGCAGATGGGATTTCGATGGAAAATCCGATAATGGGACAAACTCGGGCAGGAACAGAAGAAGAGGCGATGGGTTTAACCATTTGGAGATTACCTGGCGGTGGTTTCGCAGTAGGAAGATTTTCTGGTGGTGGAAGAGCTGGCGAGAGGGAACTACCCGCTGTTTACACAGAAATGGATGGCGGGTTCAACTCAAATGGAGCTCCGAGAAGGGTTTCGTGGACATCCAGAAGCAGCAGAGTAAGAGAAGGTCGTGGATTTGGGAGAATCTTCCGCAATTTCTTCTCCTTCGTGAGAAGGCTGAGGCCTAGCTCAACTTCATCTTCTTCATCTAATTCAAGCTCAGAATTTAGGTCTATGAGCAGAAGTTACAGTCATGCCAACTCCGTTTTCAATAGGATGGGTAACTCAAGAAGGCGCACTAGAACATGGGTCTTAGATGATTGA 1167 0.503 MNSDFSSTTMGSYWCYRCSRVIRAWVNPDEPACPYCVSGFIEEMEISPSSVTHRSPFPAHTTPMLGDGAHDLYSNNIRRQSARRRRRHAVDHSPFNPVIVFRGPVDLGGAENGEEGENSSFDLYYDDGDGTGLRPLPAPVSEFLMGSGFDRLLEQLSQIEINGLGRAENPPASKAAIESMPTIQIAETHVGSESHCAVCTEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADGISMENPIMGQTRAGTEEEAMGLTIWRLPGGGFAVGRFSGGGRAGERELPAVYTEMDGGFNSNGAPRRVSWTSRSSRVREGRGFGRIFRNFFSFVRRLRPSSTSSSSSNSSSEFRSMSRSYSHANSVFNRMGNSRRRTRTWVLDD* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01210 388 Pfam zinc-ribbon 12 44 IPR039525 GO:0061630
Pte15g01210 388 Pfam Ring finger domain 195 237 IPR001841 -
Pte15g01210 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 243 IPR013083 -
Pte15g01210 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 84 241 - -
Pte15g01210 388 SMART ring_2 196 236 IPR001841 -
Pte15g01210 388 SUPERFAMILY RING/U-box 176 242 - -
Pte15g01210 388 CDD RING-H2_RNF126-like 196 237 - -
Pte15g01210 388 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Pte15g01210 388 Pfam Protein of unknown function (DUF1117) 264 373 IPR010543 -
Pte15g01210 388 FunFam E3 ubiquitin-protein ligase RING1-like 158 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01210 Pte-Chr15 9223762 9228932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01210 135 248 C3H Transcription Factor Family AT5G01980 46.491 3.02e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01210 K11982 - vvi:100265659 447.588