Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01183 ATGCTTAGGGACGGTTTCAAATTTTGTCGGATATTCTCCTTAACTCGAATGAGGCATGCCTCCGGCTATTGCACGAAGTCCAAGCTGTTCGTTGGAGGGCTTTCATATGATACCAATGAGACTATACTGTCGGATGCGTTTGGTCAATATGGTGAAGTTATTGAAGCTAAAGTCATATGTGATCACGTTAGTGGGAAATCAAAGGGGTATGCATTTGTGCGGTTCACTTCCAAAACTGCAGCTGAAACAGCTTTCAAGGAGATGAACGGTCAGGTTCTGGATGGTAGAAATATTCGCGTTGATTTTGCACATAGAGAATAG 321 0.4299 MLRDGFKFCRIFSLTRMRHASGYCTKSKLFVGGLSYDTNETILSDAFGQYGEVIEAKVICDHVSGKSKGYAFVRFTSKTAAETAFKEMNGQVLDGRNIRVDFAHRE* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01183 106 SUPERFAMILY RNA-binding domain, RBD 26 104 IPR035979 GO:0003676
Pte15g01183 106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 99 IPR000504 GO:0003723
Pte15g01183 106 SMART rrm1_1 28 101 IPR000504 GO:0003723
Pte15g01183 106 Gene3D - 16 106 IPR012677 -
Pte15g01183 106 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 12 106 - -
Pte15g01183 106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Pte15g01183 106 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 25 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01183 Pte-Chr15 9018008 9018793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01183 27 106 Eukaryotic Initiation Factors Gene Family AT3G16380 42.500 3.23e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01183 K13195 - jre:108999661 142.895