Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01181 ATGGCAAAGAGACTTGGCCATCAGATCTTTGTTAGCAGGTTATCATCATATACCACTAATGAACATCTGAAGAGGTTGTTTTCTCCATTTGGGGTTGTTACCGAAGCTAAATTGGTGAAAGACTCTAAAACTGGGAGGCCCAAGGGGTTTGGTTTTGTCTCATACGAGACAGCAAGTGAAGCACAGAAGGCAATTAAAGTGATGAATGGCAGGGTAACTACTATCTCTGTCAGAAAAATTATTCTGTTAATAACATTCTTCAGAGCAAGACTCTGCAAACGAAATCAACTTGTCACCTTTTAG 303 0.3993 MAKRLGHQIFVSRLSSYTTNEHLKRLFSPFGVVTEAKLVKDSKTGRPKGFGFVSYETASEAQKAIKVMNGRVTTISVRKIILLITFFRARLCKRNQLVTF* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01181 100 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 7 71 - -
Pte15g01181 100 SMART rrm1_1 8 78 IPR000504 GO:0003723
Pte15g01181 100 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 72 IPR000504 GO:0003723
Pte15g01181 100 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 80 IPR000504 GO:0003723
Pte15g01181 100 Gene3D - 2 86 IPR012677 -
Pte15g01181 100 SUPERFAMILY RNA-binding domain, RBD 7 72 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01181 Pte-Chr15 9011641 9014230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01181 6 72 Eukaryotic Initiation Factors Gene Family AT2G23350 38.806 9.98e-12 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01181 K13195 - mnt:21394118 115.161