Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01179 ATGGAGATGAGAAGATATCAAGTTACCAATAAGTCTGATAAGGCCGGTGAAAGCATTAGTTCTAGTTCTAGTTCTACTTCTATTTCTAAGACGACGGCGACGACTGAACAAAATTCGACAACCCAGATCAAGGAGGGCCGTAGTTTCACGTGCAAGACATGTAACAAGGAGTTCTCAACCTTTCAAGCCCTAGGAGGCCACAGGACAAGCCATAACATCAAACCAAAGATAACCTCAGAACTCAGCGAACGCTCTCCAAAGTCGAAGACGCACATTTGTCCTATCTGTGGGGCTGAGTTTACACTGGGACAATCGCTAGGAGGGCACATGAGAATGCACAGAACCCGTCTGGATACACTACGAGAACAATATTCTTTGGAGGAGAAGGAAGATGTTCCCGTTTTCAAGAAATCTTCCAGCATTGAAAACAAAAGGATCGCTTTGAGTTTTGATTTGAACTTGACACCCGAAGAGAACTACGTCAAGTCCAGATGGACCATGAGTACTACTCCGTCAGTGTTGGGTTCTTCTATATGA 537 0.4451 MEMRRYQVTNKSDKAGESISSSSSSTSISKTTATTEQNSTTQIKEGRSFTCKTCNKEFSTFQALGGHRTSHNIKPKITSELSERSPKSKTHICPICGAEFTLGQSLGGHMRMHRTRLDTLREQYSLEEKEDVPVFKKSSSIENKRIALSFDLNLTPEENYVKSRWTMSTTPSVLGSSI* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01179 178 Gene3D Classic Zinc Finger 15 119 - -
Pte15g01179 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Pte15g01179 178 PANTHER ZINC FINGER PROTEIN ZAT5 20 158 - -
Pte15g01179 178 SUPERFAMILY beta-beta-alpha zinc fingers 47 113 IPR036236 -
Pte15g01179 178 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Pte15g01179 178 Pfam C2H2-type zinc finger 49 71 - -
Pte15g01179 178 Pfam C2H2-type zinc finger 91 115 - -
Pte15g01179 178 Coils Coil 110 130 - -
Pte15g01179 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Pte15g01179 178 SMART c2h2final6 49 71 IPR013087 -
Pte15g01179 178 SMART c2h2final6 91 113 IPR013087 -
Pte15g01179 178 MobiDBLite consensus disorder prediction 1 44 - -
Pte15g01179 178 MobiDBLite consensus disorder prediction 12 44 - -
Pte15g01179 178 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01179 Pte-Chr15 8966161 8966823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01179 38 173 C2H2 Transcription Factor Family AT2G37430 43.662 1.39e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g01179 zf-C2H2_6 1.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01179 - - qsa:O6P43_028273 118.242