Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01177 ATGAAAATGGGGCAAGAGGAAATGAGAAAAGGTCCCTGGACCGAACAGGAGGACTTGAAATTAGTTTCTTTTGTGAGCTTATTTGGAGATCGAAGATGGGATTTTATAGCCAAGGTTTCAGGTTTACACAGAACTGGCAAGAGTTGCAGGTTAAGGTGGGTTAATTACTTGCATCCTGGTCTCAGAAGAGGAAAGATGACCCCTCAAGAAGAGCGTCTGGTGCTCGAACTTCACTCCAAGTGGGGAAATAGATGGTCAAAAATTGCTCGCAAATTACCTGGGCGCACGGACAATGAGATCAAGAATTACTGGAGAACTTACATGAGAAAGGAGGCTCAAAAGAAGAAACGAGCTTCATCTCCCAAATCAGCATCCTCGAATAGTTATTCCTCCTCATCAACTGACCAAATTGTAGAATCTTTTCCTTCCTCAGTGGCTGGAGTAGAGAGTTTTTATGATACTGGAGGAGTAACTGTAAAAGCTTCAGATGACAAGAGAAAAGACAAAGACAGAGAAGAAGGAGGTGATCAGTCAGGGTGCTCCATGGATGATATATGGAAAAATATTGATATGTCAGAATTTGATTTTTTGCAACCAGTTTATGATGGACACAGTGAAGAAGGCTGCAACTTCTCCGGCCCACCAATCAATTCTCCATCATGGGAGTATTCTGCAGAATCCTTGTGGATGATGGATGACGAAGAAAGTAAAATGTTTCTCCCTACAGCAAGCGACAAATTTCTCTCATGTTATGAATTTGGAGACTACCTATTAACAGTTTAA 783 0.4163 MKMGQEEMRKGPWTEQEDLKLVSFVSLFGDRRWDFIAKVSGLHRTGKSCRLRWVNYLHPGLRRGKMTPQEERLVLELHSKWGNRWSKIARKLPGRTDNEIKNYWRTYMRKEAQKKKRASSPKSASSNSYSSSSTDQIVESFPSSVAGVESFYDTGGVTVKASDDKRKDKDREEGGDQSGCSMDDIWKNIDMSEFDFLQPVYDGHSEEGCNFSGPPINSPSWEYSAESLWMMDDEESKMFLPTASDKFLSCYEFGDYLLTV* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01177 260 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Pte15g01177 260 CDD SANT 65 108 IPR001005 -
Pte15g01177 260 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Pte15g01177 260 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Pte15g01177 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 143 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pte15g01177 260 SMART sant 62 110 IPR001005 -
Pte15g01177 260 SMART sant 9 59 IPR001005 -
Pte15g01177 260 FunFam Myb transcription factor 10 62 - -
Pte15g01177 260 CDD SANT 12 57 IPR001005 -
Pte15g01177 260 FunFam MYB transcription factor 65 132 - -
Pte15g01177 260 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pte15g01177 260 Gene3D - 10 62 - -
Pte15g01177 260 MobiDBLite consensus disorder prediction 119 134 - -
Pte15g01177 260 MobiDBLite consensus disorder prediction 160 178 - -
Pte15g01177 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Pte15g01177 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Pte15g01177 260 Gene3D - 65 137 - -
Pte15g01177 260 MobiDBLite consensus disorder prediction 160 182 - -
Pte15g01177 260 MobiDBLite consensus disorder prediction 111 134 - -
Pte15g01177 260 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01177 Pte-Chr15 8946732 8947799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01177 1 254 MYB Transcription Factor Family AT5G59780 61.176 6.31e-95 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte15g01177 Myb_DNA-binding 7.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01177 K09422 - tcc:18590753 336.265