Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01173 ATGTCGCCAGCAAAAGTTGATAGTTCAAAAAAGGCTGACCCAAAGGCCCGAGCGTTGAAAGCAGCAAAGGCTATCAAATCTGGCTCAATTGTCAAGAAGAAGGTTAAGAAAATGCGTACTTCTGTCACATTCCATCGTCCAAAGACATTGAAGAAGGAAAGAAATCCTAAATATCCTCGACTCAGTGCTCCTCCCAGGAACAAGCTTGATCATTACCAGATCCTCAAATATCCACTGACCACTGAATCTGCGATGAAGAAAATTGAAGATAATAACACTTTAGTTTTCATTGTTGACTTGCGAGCTGATAAGAAAAAGATCAAGGATGCTGTTAAAAAGATGTACGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGGCCTGATGGTACCAAGAAGGCTTATGTGAGATTGACTCCAGATTGTGATGCTCTCGATGTTGCAAACAAAATTGGGATAATCTAA 465 0.4022 MSPAKVDSSKKADPKARALKAAKAIKSGSIVKKKVKKMRTSVTFHRPKTLKKERNPKYPRLSAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDCDALDVANKIGII* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01173 154 FunFam 60S ribosomal protein L23a 33 154 - -
Pte15g01173 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 GO:0019843
Pte15g01173 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pte15g01173 154 NCBIfam 50S ribosomal protein L23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Pte15g01173 154 Pfam Ribosomal protein L23 74 134 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pte15g01173 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pte15g01173 154 Pfam Ribosomal protein L23, N-terminal domain 15 64 IPR005633 -
Pte15g01173 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Pte15g01173 154 MobiDBLite consensus disorder prediction 36 66 - -
Pte15g01173 154 Gene3D - 35 154 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01173 Pte-Chr15 8916828 8918680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01173 1 155 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.097 3.49e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01173 K02893 - jre:109021970 240.35