Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01148 ATGTTGGATCTTAATCTAGACGTGGTGATCAATGAGTCGCCTCAGGATGATGACTCGATCAGGTTCTCTGATAAATTTCCTGAAGTTTGTTCTGGCAACCAAGTGAATGAATCTGGAACTTCCAATTCTTCAACAGTCAATGCTGAAGGCTCCAACAATGGAGGGGGAGACGACGACTCGTGTTCTACACGCACCGACGGTGACTTCACTCTCAATTTCGGTATCCTTAAGGTGGATCCGAGCAGCGATATCATGGCGACGAAGGAACTGTTTCCGTTGAGTGTTAGTACTGCAAATATGAAGAGAAAGGACGGGGATTGTAGAAACTGGCATGGACAGTCTTCATCATCGACGAAGAGCTGGAGTGGTTTCTCGTTCGATCATGGTGGTGGTGGGACCAGGAGCGGAGAGTTGACGGTGGTTGGGGTTCAATTTCAACAGCAACAGCCACAACCTCCGCAGGAGCAGGTGAAGAAGAGCAGAAGGGGACCCAGGTCTCGTAGCTCCCAGTACAGAGGTGTGACCTTTTACAGAAGGACTGGGAGATGGGAATCGCACATCTGGGATTGCGGGAAACAAGTCTATTTAGGTGGGTTTGACACTGCTATTGTTGCTGCTAGAGCCTATGATCGAGCTGCCATCAAGTTTAGAGGTATGAACGCAGACATCAATTTCAATCTCAGCGATTATGAGGAGGACATGAAGCAGATTAAGAGTCTCACGAAAGAGGAATTTGTGCACGTACTGCGTCGCCAGAGTACTGGTTTCTCAAGGGGGAGCTCCAAATACAGAGGAGTGACACTGCACAAATGTGGGAGATGGGAAGCTCGAATGGGGCAATTTCTTGGCAAAAAGGCTTATGACAAGGCTGCCATCAAATGGAATGGAAGGGAGGCAGTGACAAACTTCCAGGCAAGAACGTATAAGAGGGAGGTGAAACCAGACCAGGGTAATGATGGTGGAAACTACAAACTTGACCTCAATCTGAGTATCTCTACCTCATCATTTGGCAATGATCCAAAGGAAAGCAGGGGGCTTATTCAATTCCAATGTGGACCTTATGACATTCACAATGGAACGAGTTCAAGTATGGAAAATAAAGCAAATCCTTCGGGAGTGGATCCACGTCTCAAAGGGTTAGTAGTAAGGGAAGGGCAGCCCTCCCTTTGGAATTGTGTATATCCAGGCCTCTTGCCCAACGAGGAAAGAGCAAATGGAAGAATTACAATAGGGGTTTCACAAGGACTTCCCAATTGTGCATGGCCAAAGCATGGTCAGGTGAATGTGGCCTCATCAGTGTCACCCGTGGCCATGACAACTGCAGCATCATCAGGATTCTCATTTGCGGCTCCCTTTCCCTCGACTTCTTTCCTCCAGGTGAAATCTTCTCAAGCAACAACCCGTCATAATATCTGCTTTGCTTCGTCAAATTCAGCTGCCACCGCCACCTCTCAATACTTTGACGGGTTTTGA 1473 0.4779 MLDLNLDVVINESPQDDDSIRFSDKFPEVCSGNQVNESGTSNSSTVNAEGSNNGGGDDDSCSTRTDGDFTLNFGILKVDPSSDIMATKELFPLSVSTANMKRKDGDCRNWHGQSSSSTKSWSGFSFDHGGGGTRSGELTVVGVQFQQQQPQPPQEQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAIVAARAYDRAAIKFRGMNADINFNLSDYEEDMKQIKSLTKEEFVHVLRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKWNGREAVTNFQARTYKREVKPDQGNDGGNYKLDLNLSISTSSFGNDPKESRGLIQFQCGPYDIHNGTSSSMENKANPSGVDPRLKGLVVREGQPSLWNCVYPGLLPNEERANGRITIGVSQGLPNCAWPKHGQVNVASSVSPVAMTTAASSGFSFAAPFPSTSFLQVKSSQATTRHNICFASSNSAATATSQYFDGF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01148 490 MobiDBLite consensus disorder prediction 31 63 - -
Pte15g01148 490 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 91 330 - -
Pte15g01148 490 FunFam AP2-like ethylene-responsive transcription factor 169 228 - -
Pte15g01148 490 MobiDBLite consensus disorder prediction 102 128 - -
Pte15g01148 490 CDD AP2 261 305 IPR001471 GO:0003700|GO:0006355
Pte15g01148 490 MobiDBLite consensus disorder prediction 145 171 - -
Pte15g01148 490 SMART rav1_2 262 310 IPR001471 GO:0003700|GO:0006355
Pte15g01148 490 SMART rav1_2 170 232 IPR001471 GO:0003700|GO:0006355
Pte15g01148 490 MobiDBLite consensus disorder prediction 110 124 - -
Pte15g01148 490 SUPERFAMILY DNA-binding domain 169 227 IPR016177 GO:0003677
Pte15g01148 490 Pfam AP2 domain 170 218 IPR001471 GO:0003700|GO:0006355
Pte15g01148 490 CDD AP2 170 228 IPR001471 GO:0003700|GO:0006355
Pte15g01148 490 Gene3D AP2/ERF domain 169 227 IPR036955 GO:0003700|GO:0006355
Pte15g01148 490 ProSiteProfiles AP2/ERF domain profile. 170 226 IPR001471 GO:0003700|GO:0006355
Pte15g01148 490 SUPERFAMILY DNA-binding domain 261 305 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01148 Pte-Chr15 8685177 8688047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01148 1 456 AP2-EREBP Transcription Factor Family AT5G60120 44.280 6.21e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte15g01148 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01148 K09284 - qsa:O6P43_000276 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01654 18 27882573 27885606 Pte15g01148 15 8685177 8688047 RCT
Pte15g01148 15 8685177 8688047 Pte15g01148 15 8685177 8688047 RCT