Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01127 ATGTCTGACCAGCGAGGACTTTCCATTCCTTCGACAATCAGAGGCTTCACTCAAGAACAAAACCCAAAGCCTAGTCCTATTTCTAACCCTAGTTCAAATCCATTCAAGAGGAAGAGAAATTTGCCTGGAAATCCAGATCCAGATGCAGAAGTCGTAGCTCTATCCCCGAAGTCACTCATGGCGACGAACAGATTCATGTGCGAAATCTGCAACAAGGGCTTCCAGAGAGACCAGAACTTGCAGCTTCACCGACGTGGACACAACCTTCCATGGAAGCTCAAGCAACAAACTAACAAAGAACCGGTCAGGAAAAAGGTGTACGTATGTCCCGAGAAGACCTGCGTTCACCATGACCCATCCAGAGCCCTTGGAGACCTCACAGGAGTAAAGAAACACTACAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGTTCAAAGAAGTATGCAGTTCAGTCGGACTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAATACAGATGTGACTGTGGCATACTTTTCTCCAGGAAGGATAGCTTCATCACCCACAGAGCTTTTTGTGATGCTTTGAGTGAAGAAAGTACTCGATTTACTTCAGTTCCAACTGGAGCTTATACTAATCTGAGAAATGATGAGTTCGTCAATGGGACAATAAGTCTTAATCCTCCAATGTCACAAGTTGGGATTCAAGCCCAATTTTCAGGCTCAGAGCTGCTTGGGAACTTTGTCGTCAGTGCAGATGGTCAGCAGAAACCGAGGTTTCCTTTGTGGTTGGAGAATGGTAATGCTCAGCCCAATGCTAACCTATTTGTTGGGATTAATGCATTTTCATCATCATCAGGGGCAAGCTCAACCAGCTTGCCTGACATGGTGCAAACAATGAGTATGATTGGCCCCTCATCCGAGACAATACAGTGGCGGAACAGGTATCAAGATATAACATATACAAATGCCGGTAACCCCTCTATGTCAGCAGTACCAAATGGAACGAAGGAGGAAGAAGAAAGAAAAACAAAGTTGTCTGGAAGCATTGCCTCTTTGTATTCTCATATCAATGATACTCAGAGTATTGGACCTGCCCAGAGTCACATTTCAGCAACTGCACTTCTACAGAAAGCAACACAGACGATGGGATCTACAAGGAGCAATGTAACTGCCTTCAACACCAATGACGTCTTTGGCATGGTAGATACTAATCTATCGAATATGTCGGGGCTGTACTCCTGCAACAGCAATACATTACATCAAGAGATTCAGAAATTTTACCAAGATAACCAAGTGGCCAGGAACTTCAACCGCTCTTTGCAGAACCCCACCAAGCGCTTCGGTCATAAAACTGTCATGCCAGACAATGGTAAGCAACGTCAACAGTTACCAGTTATGACAAAGAGACTGCATTCGAGCGTAAACCAAGACCAGAGCAGTATGACTAGAGATTTTCTTGGTGTTGGAGGAGATTCAATAAGTAGGCCGCTGTTACAGCAAGAATTGGCCAAGTTTTCTGCAACAAGTTCTGCAATGGACTTGAGCTAG 1542 0.4494 MSDQRGLSIPSTIRGFTQEQNPKPSPISNPSSNPFKRKRNLPGNPDPDAEVVALSPKSLMATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQQTNKEPVRKKVYVCPEKTCVHHDPSRALGDLTGVKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGILFSRKDSFITHRAFCDALSEESTRFTSVPTGAYTNLRNDEFVNGTISLNPPMSQVGIQAQFSGSELLGNFVVSADGQQKPRFPLWLENGNAQPNANLFVGINAFSSSSGASSTSLPDMVQTMSMIGPSSETIQWRNRYQDITYTNAGNPSMSAVPNGTKEEEERKTKLSGSIASLYSHINDTQSIGPAQSHISATALLQKATQTMGSTRSNVTAFNTNDVFGMVDTNLSNMSGLYSCNSNTLHQEIQKFYQDNQVARNFNRSLQNPTKRFGHKTVMPDNGKQRQQLPVMTKRLHSSVNQDQSSMTRDFLGVGGDSISRPLLQQELAKFSATSSAMDLS* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01127 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Pte15g01127 513 MobiDBLite consensus disorder prediction 1 38 - -
Pte15g01127 513 Gene3D Classic Zinc Finger 61 88 - -
Pte15g01127 513 MobiDBLite consensus disorder prediction 1 48 - -
Pte15g01127 513 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Pte15g01127 513 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Pte15g01127 513 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Pte15g01127 513 FunFam protein indeterminate-domain 12-like 44 113 - -
Pte15g01127 513 Gene3D Classic Zinc Finger 100 190 - -
Pte15g01127 513 SMART c2h2final6 65 87 IPR013087 -
Pte15g01127 513 SMART c2h2final6 107 137 IPR013087 -
Pte15g01127 513 SMART c2h2final6 142 162 IPR013087 -
Pte15g01127 513 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Pte15g01127 513 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 497 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01127 Pte-Chr15 8449540 8452977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01127 36 230 IDZ Gene Family AT3G45260 80.711 4.26e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g01127 zf-C2H2_jaz 6.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01127 K25870 - tcc:18590071 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01127 15 8449540 8452977 Pte15g01127 15 8449540 8452977 RCT